miRNA display CGI


Results 141 - 160 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 127268 0.67 0.450077
Target:  5'- gCUAGguGGuuuuGUGGCgGCCGCCU-CUGCa -3'
miRNA:   3'- gGGUCguCC----UACCG-CGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 64488 0.67 0.450077
Target:  5'- cCCCAGCA-GAUGcGCgGCCacgucauccaGCCCGCgcaGCg -3'
miRNA:   3'- -GGGUCGUcCUAC-CG-CGG----------CGGGCGg--CG- -5'
6481 5' -64.2 NC_001847.1 + 130934 0.67 0.476554
Target:  5'- aCCGcGCAGGGcuuUGGCuGCCuGCgCGCgGCc -3'
miRNA:   3'- gGGU-CGUCCU---ACCG-CGG-CGgGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 129018 0.67 0.476554
Target:  5'- cCCCgauGGCGGcGA-GGCGCuCGCgCCGCgccuCGCg -3'
miRNA:   3'- -GGG---UCGUC-CUaCCGCG-GCG-GGCG----GCG- -5'
6481 5' -64.2 NC_001847.1 + 5834 0.67 0.485551
Target:  5'- gCCCGGCAGGcc--CGCCuugcaccagGCCCGCCc- -3'
miRNA:   3'- -GGGUCGUCCuaccGCGG---------CGGGCGGcg -5'
6481 5' -64.2 NC_001847.1 + 54685 0.67 0.485551
Target:  5'- gCCCGaCGGcGgcGGCGgCGCCCGCgGg -3'
miRNA:   3'- -GGGUcGUC-CuaCCGCgGCGGGCGgCg -5'
6481 5' -64.2 NC_001847.1 + 4301 0.66 0.493717
Target:  5'- cCUCGGCuucGAUGGCggcggcuaugacgGCCGCUUcgGCCGCg -3'
miRNA:   3'- -GGGUCGuc-CUACCG-------------CGGCGGG--CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 38943 0.66 0.493717
Target:  5'- uCCCGGgccCGGGGgccgcgagcgccaUGGCGgCGgCCGCgGCg -3'
miRNA:   3'- -GGGUC---GUCCU-------------ACCGCgGCgGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 29306 0.66 0.494629
Target:  5'- gCCgAGCuGcucGGCGCgGCCCGCgaCGCg -3'
miRNA:   3'- -GGgUCGuCcuaCCGCGgCGGGCG--GCG- -5'
6481 5' -64.2 NC_001847.1 + 79787 0.66 0.494629
Target:  5'- cUCCGGCGcccgcGGCGCguucaGCaCCGCCGCg -3'
miRNA:   3'- -GGGUCGUccua-CCGCGg----CG-GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 126126 0.67 0.476554
Target:  5'- gUCUAGCAGGG-GGuCGCgGCCgCGCaCGa -3'
miRNA:   3'- -GGGUCGUCCUaCC-GCGgCGG-GCG-GCg -5'
6481 5' -64.2 NC_001847.1 + 14812 0.67 0.471196
Target:  5'- gCCCGGcCGGGAgcUGGUguuccaggaaaaucaGCCGgCC-CCGCa -3'
miRNA:   3'- -GGGUC-GUCCU--ACCG---------------CGGCgGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 89639 0.67 0.450077
Target:  5'- gCCCGGC-----GGCGgCGCCCGCCccggGCg -3'
miRNA:   3'- -GGGUCGuccuaCCGCgGCGGGCGG----CG- -5'
6481 5' -64.2 NC_001847.1 + 96585 0.67 0.458814
Target:  5'- cUCCGGCAGca-GGCGCUGCCaguaaCGCg -3'
miRNA:   3'- -GGGUCGUCcuaCCGCGGCGGgcg--GCG- -5'
6481 5' -64.2 NC_001847.1 + 106282 0.67 0.458814
Target:  5'- cCCCAGCGccGccGGCGUCGCgcgcgCgGCCGCg -3'
miRNA:   3'- -GGGUCGUc-CuaCCGCGGCG-----GgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 80652 0.67 0.458814
Target:  5'- cCCCGGCccc--GGCGCCGCC-GUCGUu -3'
miRNA:   3'- -GGGUCGuccuaCCGCGGCGGgCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 95645 0.67 0.467641
Target:  5'- cUCUGGCGcGGggGGCGgCGCggGCCGCu -3'
miRNA:   3'- -GGGUCGU-CCuaCCGCgGCGggCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 95726 0.67 0.467641
Target:  5'- cUCUGGCGcGGggGGCGgCGCggGCCGCu -3'
miRNA:   3'- -GGGUCGU-CCuaCCGCgGCGggCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 89318 0.67 0.467641
Target:  5'- gCCCAGCGaguggcccGGgcGGCaGCU-CCCGCCGg -3'
miRNA:   3'- -GGGUCGU--------CCuaCCG-CGGcGGGCGGCg -5'
6481 5' -64.2 NC_001847.1 + 21963 0.67 0.467641
Target:  5'- aCCGGgGGGGgcuuucGGCgGCgGCCCccucGCCGCc -3'
miRNA:   3'- gGGUCgUCCUa-----CCG-CGgCGGG----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.