miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 102203 0.66 0.987208
Target:  5'- ------cUCCGCCCCCccggCCCCGc---- -3'
miRNA:   3'- gcuuuaaAGGCGGGGG----GGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 135086 0.66 0.99014
Target:  5'- -------cCCGCCCCCgCCCGcc-GCa -3'
miRNA:   3'- gcuuuaaaGGCGGGGGgGGGUuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 126645 0.66 0.99014
Target:  5'- aGggGg--CCcacguaagggGCCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gCuuUaaaGG----------CGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 103021 0.66 0.987208
Target:  5'- -------nCCGCCCCCggcgCCCGGGGGCc -3'
miRNA:   3'- gcuuuaaaGGCGGGGGg---GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 107948 0.66 0.987208
Target:  5'- -----cUUCCcuucCCCCCCCCCAc---- -3'
miRNA:   3'- gcuuuaAAGGc---GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 107149 0.66 0.98551
Target:  5'- uCGGccgcggCCGCCUCCgCCCCGGccGCg -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGG-GGGGUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 61772 0.66 0.983645
Target:  5'- cCGAagacAAUgcCCGCCgaCCCCCCGccGGCa -3'
miRNA:   3'- -GCU----UUAaaGGCGGg-GGGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 39607 0.66 0.988748
Target:  5'- gCGGcg---CgGCCCCagCCCCAGGGGCa -3'
miRNA:   3'- -GCUuuaaaGgCGGGGg-GGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 48646 0.66 0.988748
Target:  5'- gCGggGcg-CCGCCgCCCCCgCAGc--- -3'
miRNA:   3'- -GCuuUaaaGGCGGgGGGGG-GUUuuug -5'
6482 3' -51.2 NC_001847.1 + 39982 0.66 0.988748
Target:  5'- cCGA----UCgCGCCCCCCgCCAugccGGCa -3'
miRNA:   3'- -GCUuuaaAG-GCGGGGGGgGGUuu--UUG- -5'
6482 3' -51.2 NC_001847.1 + 102718 0.66 0.981603
Target:  5'- gCGAAAggcCCGCaCCCCCcggcugCCCcAAGGCg -3'
miRNA:   3'- -GCUUUaaaGGCG-GGGGG------GGGuUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 103447 0.66 0.99014
Target:  5'- --------gCGCCUCCCCCCGcccccGAGGCc -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGU-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 119819 0.66 0.983645
Target:  5'- -------cCCGCCCgCCCCCGcu-ACg -3'
miRNA:   3'- gcuuuaaaGGCGGGgGGGGGUuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 112725 0.66 0.988748
Target:  5'- ------gUCUcggGCCCCgCCCCCGcgGACg -3'
miRNA:   3'- gcuuuaaAGG---CGGGG-GGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 26849 0.66 0.981603
Target:  5'- aCGAGAgcagUCCGCCCaggcaCCCGAGuGCc -3'
miRNA:   3'- -GCUUUaa--AGGCGGGggg--GGGUUUuUG- -5'
6482 3' -51.2 NC_001847.1 + 27057 0.66 0.98551
Target:  5'- aGAGAggcCCGCagCCCCCCgGGcgGCa -3'
miRNA:   3'- gCUUUaaaGGCGg-GGGGGGgUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 126533 0.66 0.988748
Target:  5'- ------cUCC-CCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gcuuuaaAGGcGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 89038 0.66 0.99014
Target:  5'- -------aUCGCCCagCCCCCgCGGAAGCg -3'
miRNA:   3'- gcuuuaaaGGCGGG--GGGGG-GUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 80610 0.66 0.981603
Target:  5'- -------cCCGCCCCCgCCCCcgccGCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGG-GGGGuuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 114615 0.66 0.99014
Target:  5'- aGAAGUUcacgUCCuuccaguggGCCCCCgCCCgCGAcGACg -3'
miRNA:   3'- gCUUUAA----AGG---------CGGGGG-GGG-GUUuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.