miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 135095 1.11 0.005043
Target:  5'- cCGAAAUUUCCGCCCCCCCCCAAAAACa -3'
miRNA:   3'- -GCUUUAAAGGCGGGGGGGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 32282 1.11 0.005043
Target:  5'- cCGAAAUUUCCGCCCCCCCCCAAAAACa -3'
miRNA:   3'- -GCUUUAAAGGCGGGGGGGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 118529 0.83 0.309419
Target:  5'- --------gCGCCCCCCCCCAAAGACc -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 128304 0.74 0.714081
Target:  5'- -------gCCGCCCCCCCCCcc-AACu -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 25491 0.74 0.714081
Target:  5'- -------gCCGCCCCCCCCCcc-AACu -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 44499 0.74 0.714081
Target:  5'- uGAuGUUUCCuuuCCCCCCCCCAu---- -3'
miRNA:   3'- gCUuUAAAGGc--GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 50679 0.73 0.774649
Target:  5'- -------cCCGCCCCCCCCCc----- -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 27474 0.73 0.78432
Target:  5'- -------gCCGCCCCCCCCCc----- -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 130287 0.73 0.78432
Target:  5'- -------gCCGCCCCCCCCCc----- -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 81262 0.72 0.830247
Target:  5'- aCGggGggcCCGCCCgCCCCCGc-GGCg -3'
miRNA:   3'- -GCuuUaaaGGCGGGgGGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 19581 0.72 0.830247
Target:  5'- aGGAGUUU-CGCCCCCCUCCc----- -3'
miRNA:   3'- gCUUUAAAgGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 4240 0.72 0.83888
Target:  5'- cCGAGGgcaCCGCCgCCCCCCGc---- -3'
miRNA:   3'- -GCUUUaaaGGCGGgGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 33700 0.72 0.83888
Target:  5'- gCGGcAGUUUCCGCgCCCCCCagcucucGGAGCc -3'
miRNA:   3'- -GCU-UUAAAGGCGgGGGGGGgu-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 107053 0.72 0.83888
Target:  5'- cCGAGGgcaCCGCCgCCCCCCGc---- -3'
miRNA:   3'- -GCUUUaaaGGCGGgGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 88625 0.72 0.84731
Target:  5'- -------gCCGCCgCCCCCCGAGcGCu -3'
miRNA:   3'- gcuuuaaaGGCGGgGGGGGGUUUuUG- -5'
6482 3' -51.2 NC_001847.1 + 92520 0.71 0.855527
Target:  5'- uCGGcgcugCCGCCCCCCUCCGc-GGCg -3'
miRNA:   3'- -GCUuuaaaGGCGGGGGGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 35369 0.71 0.863525
Target:  5'- -------gCUGCCCCCCgCCCAAAGccGCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGG-GGGUUUU--UG- -5'
6482 3' -51.2 NC_001847.1 + 58736 0.71 0.87809
Target:  5'- gCGggGUgcccCCGCCgcggcccccggcgCCCCCCCcGAGGCc -3'
miRNA:   3'- -GCuuUAaa--GGCGG-------------GGGGGGGuUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 33019 0.71 0.878833
Target:  5'- gCGGAGUgccgCCGCCCUCuCCgCCGAGcugGACg -3'
miRNA:   3'- -GCUUUAaa--GGCGGGGG-GG-GGUUU---UUG- -5'
6482 3' -51.2 NC_001847.1 + 119667 0.71 0.878833
Target:  5'- gGAGGgcaacggCgGCCCCCCaggaCCCGAAGGCg -3'
miRNA:   3'- gCUUUaaa----GgCGGGGGG----GGGUUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.