miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 188 0.69 0.935447
Target:  5'- cCGggGcccCCGCCCCCgCCCCc----- -3'
miRNA:   3'- -GCuuUaaaGGCGGGGG-GGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 208 0.66 0.987208
Target:  5'- -------nCCGCCCCCggcgCCCGGGGGCc -3'
miRNA:   3'- gcuuuaaaGGCGGGGGg---GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 634 0.66 0.99014
Target:  5'- --------gCGCCUCCCCCCGcccccGAGGCc -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGU-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 2408 0.67 0.974333
Target:  5'- aGAG----UCGUCCUCCCCCGAGGGg -3'
miRNA:   3'- gCUUuaaaGGCGGGGGGGGGUUUUUg -5'
6482 3' -51.2 NC_001847.1 + 4240 0.72 0.83888
Target:  5'- cCGAGGgcaCCGCCgCCCCCCGc---- -3'
miRNA:   3'- -GCUUUaaaGGCGGgGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 4283 0.69 0.94045
Target:  5'- uGAGGggcgCCGCCCCCgCCUCGGc--- -3'
miRNA:   3'- gCUUUaaa-GGCGGGGG-GGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 4336 0.66 0.98551
Target:  5'- uCGGccgcggCCGCCUCCgCCCCGGccGCg -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGG-GGGGUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 5135 0.66 0.987208
Target:  5'- -----cUUCCcuucCCCCCCCCCAc---- -3'
miRNA:   3'- gcuuuaAAGGc---GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 7266 0.67 0.979377
Target:  5'- ----uUUUCCcccucCCCCCCCCCAu---- -3'
miRNA:   3'- gcuuuAAAGGc----GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 7538 0.68 0.952678
Target:  5'- -uGAGUUUCUauucguccuuuuguGCCCCCCCCCc----- -3'
miRNA:   3'- gcUUUAAAGG--------------CGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 9053 0.67 0.968447
Target:  5'- ------cUCCGCCCCCCCgugcagcgcuCCAuu-GCa -3'
miRNA:   3'- gcuuuaaAGGCGGGGGGG----------GGUuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 9689 0.67 0.979377
Target:  5'- cCGggGcaagcCCGCCCUCCCCgGAc--- -3'
miRNA:   3'- -GCuuUaaa--GGCGGGGGGGGgUUuuug -5'
6482 3' -51.2 NC_001847.1 + 9912 0.66 0.988748
Target:  5'- ------gUCUcggGCCCCgCCCCCGcgGACg -3'
miRNA:   3'- gcuuuaaAGG---CGGGG-GGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 10359 0.69 0.930186
Target:  5'- gCGAGGgggCCGCcgccgaaagCCCCCCCCGGu--- -3'
miRNA:   3'- -GCUUUaaaGGCG---------GGGGGGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 17811 0.7 0.918883
Target:  5'- gCGggGggcgaggCCGCCCCCCgCCGc---- -3'
miRNA:   3'- -GCuuUaaa----GGCGGGGGGgGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 18095 0.7 0.912843
Target:  5'- gCGAGGcUUCCGCCuccucggcgagCCCCCgCCGGgcAGACa -3'
miRNA:   3'- -GCUUUaAAGGCGG-----------GGGGG-GGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 19581 0.72 0.830247
Target:  5'- aGGAGUUU-CGCCCCCCUCCc----- -3'
miRNA:   3'- gCUUUAAAgGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 21585 0.67 0.979377
Target:  5'- aGAGGgggCCgcgggGCCCCgCCCCCcuAAACu -3'
miRNA:   3'- gCUUUaaaGG-----CGGGG-GGGGGuuUUUG- -5'
6482 3' -51.2 NC_001847.1 + 23357 0.67 0.974333
Target:  5'- ------gUCUGCCCgCCCCCGGGc-- -3'
miRNA:   3'- gcuuuaaAGGCGGGgGGGGGUUUuug -5'
6482 3' -51.2 NC_001847.1 + 23626 0.68 0.961297
Target:  5'- uGAAggUUCugcagugCGCCCCCCUCCucuAGCc -3'
miRNA:   3'- gCUUuaAAG-------GCGGGGGGGGGuuuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.