miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 103021 0.66 0.987208
Target:  5'- -------nCCGCCCCCggcgCCCGGGGGCc -3'
miRNA:   3'- gcuuuaaaGGCGGGGGg---GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 37424 0.66 0.987208
Target:  5'- -----cUUCCGCUucugCCCCCgCCGAcGACg -3'
miRNA:   3'- gcuuuaAAGGCGG----GGGGG-GGUUuUUG- -5'
6482 3' -51.2 NC_001847.1 + 5135 0.66 0.987208
Target:  5'- -----cUUCCcuucCCCCCCCCCAc---- -3'
miRNA:   3'- gcuuuaAAGGc---GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 208 0.66 0.987208
Target:  5'- -------nCCGCCCCCggcgCCCGGGGGCc -3'
miRNA:   3'- gcuuuaaaGGCGGGGGg---GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 24921 0.66 0.987208
Target:  5'- -------nCC-CCCCCCCCCAuAAAg -3'
miRNA:   3'- gcuuuaaaGGcGGGGGGGGGUuUUUg -5'
6482 3' -51.2 NC_001847.1 + 102203 0.66 0.987208
Target:  5'- ------cUCCGCCCCCccggCCCCGc---- -3'
miRNA:   3'- gcuuuaaAGGCGGGGG----GGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 80641 0.66 0.98551
Target:  5'- -------aCCGCCCCCCaCCCc----- -3'
miRNA:   3'- gcuuuaaaGGCGGGGGG-GGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 4336 0.66 0.98551
Target:  5'- uCGGccgcggCCGCCUCCgCCCCGGccGCg -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGG-GGGGUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 32476 0.66 0.98551
Target:  5'- -------cCCGCCCCCCCgCCcuc-GCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGG-GGuuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 107149 0.66 0.98551
Target:  5'- uCGGccgcggCCGCCUCCgCCCCGGccGCg -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGG-GGGGUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 27057 0.66 0.98551
Target:  5'- aGAGAggcCCGCagCCCCCCgGGcgGCa -3'
miRNA:   3'- gCUUUaaaGGCGg-GGGGGGgUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 61772 0.66 0.983645
Target:  5'- cCGAagacAAUgcCCGCCgaCCCCCCGccGGCa -3'
miRNA:   3'- -GCU----UUAaaGGCGGg-GGGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 119819 0.66 0.983645
Target:  5'- -------cCCGCCCgCCCCCGcu-ACg -3'
miRNA:   3'- gcuuuaaaGGCGGGgGGGGGUuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 26849 0.66 0.981603
Target:  5'- aCGAGAgcagUCCGCCCaggcaCCCGAGuGCc -3'
miRNA:   3'- -GCUUUaa--AGGCGGGggg--GGGUUUuUG- -5'
6482 3' -51.2 NC_001847.1 + 102718 0.66 0.981603
Target:  5'- gCGAAAggcCCGCaCCCCCcggcugCCCcAAGGCg -3'
miRNA:   3'- -GCUUUaaaGGCG-GGGGG------GGGuUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 80610 0.66 0.981603
Target:  5'- -------cCCGCCCCCgCCCCcgccGCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGG-GGGGuuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 110079 0.67 0.979377
Target:  5'- ----uUUUCCcccucCCCCCCCCCAu---- -3'
miRNA:   3'- gcuuuAAAGGc----GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 122652 0.67 0.979377
Target:  5'- cCGGGuucuuggCCGCCCCCgCCgCCAcgcggGAAGCc -3'
miRNA:   3'- -GCUUuaaa---GGCGGGGG-GG-GGU-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 112502 0.67 0.979377
Target:  5'- cCGggGcaagcCCGCCCUCCCCgGAc--- -3'
miRNA:   3'- -GCuuUaaa--GGCGGGGGGGGgUUuuug -5'
6482 3' -51.2 NC_001847.1 + 124398 0.67 0.979377
Target:  5'- aGAGGgggCCgcgggGCCCCgCCCCCcuAAACu -3'
miRNA:   3'- gCUUUaaaGG-----CGGGG-GGGGGuuUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.