miRNA display CGI


Results 61 - 80 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 29556 0.73 0.138294
Target:  5'- uGGaGGcCGCcggcGGGGGcGCCgGCGCcGGCGCc -3'
miRNA:   3'- -CC-CCaGCG----UCCCC-CGGgCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 27422 0.73 0.138294
Target:  5'- aGGGUUGUAgccccGGGGuGCCCGCccGCGaGCGCc -3'
miRNA:   3'- cCCCAGCGU-----CCCC-CGGGCG--CGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 266 0.73 0.141295
Target:  5'- aGGGGcccgaGCccGGGGGccgccgaGCCCGCGCgGGCGCc -3'
miRNA:   3'- -CCCCag---CG--UCCCC-------CGGGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 103079 0.73 0.141295
Target:  5'- aGGGGcccgaGCccGGGGGccgccgaGCCCGCGCgGGCGCc -3'
miRNA:   3'- -CCCCag---CG--UCCCC-------CGGGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 101073 0.73 0.141632
Target:  5'- cGGGGcCGCcgcGGGGGCCgggucggcggggCGgGCGGgCGCg -3'
miRNA:   3'- -CCCCaGCGu--CCCCCGG------------GCgCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 35787 0.73 0.141632
Target:  5'- uGGGUCGCAGGGGccaagaUCCGCcCGGcCGCc -3'
miRNA:   3'- cCCCAGCGUCCCCc-----GGGCGcGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 60829 0.73 0.145043
Target:  5'- -uGG-CGCgAGGGGcGCCCgcggcgcuGCGCGGCGCc -3'
miRNA:   3'- ccCCaGCG-UCCCC-CGGG--------CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 64212 0.72 0.14853
Target:  5'- cGGGUC---GGGGuGCCCGgGCGGCGg -3'
miRNA:   3'- cCCCAGcguCCCC-CGGGCgCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 111268 0.72 0.151733
Target:  5'- cGGGUCGgAGGcggcgccGGGCCgGgGgCGGCGCu -3'
miRNA:   3'- cCCCAGCgUCC-------CCCGGgCgC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 8455 0.72 0.151733
Target:  5'- cGGGUCGgAGGcggcgccGGGCCgGgGgCGGCGCu -3'
miRNA:   3'- cCCCAGCgUCC-------CCCGGgCgC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 105592 0.72 0.152093
Target:  5'- cGGcGUCcguGCGGGGGaacucgagcGCCCGCGCcGCGCg -3'
miRNA:   3'- cCC-CAG---CGUCCCC---------CGGGCGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 43118 0.72 0.152093
Target:  5'- cGGcGGUgccCGCAGacggcgcGGGCCCGCG-GGCGCu -3'
miRNA:   3'- -CC-CCA---GCGUCc------CCCGGGCGCgCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 126229 0.72 0.152093
Target:  5'- cGGGGUCGuCGGcGGGGCguccggggucguCgGCGgGGCGUc -3'
miRNA:   3'- -CCCCAGC-GUC-CCCCG------------GgCGCgCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 124924 0.72 0.152093
Target:  5'- cGGGGgcgacaGCGGGcgcgcccuGGGCCCG-GCGGCGg -3'
miRNA:   3'- -CCCCag----CGUCC--------CCCGGGCgCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 67971 0.72 0.152093
Target:  5'- gGGGGUCGCcgccgagagcGGGGGGCCUGUcaUGGCccagGCa -3'
miRNA:   3'- -CCCCAGCG----------UCCCCCGGGCGc-GCCG----CG- -5'
6482 5' -67.7 NC_001847.1 + 23416 0.72 0.152093
Target:  5'- cGGGGUCGuCGGcGGGGCguccggggucguCgGCGgGGCGUc -3'
miRNA:   3'- -CCCCAGC-GUC-CCCCG------------GgCGCgCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 22111 0.72 0.152093
Target:  5'- cGGGGgcgacaGCGGGcgcgcccuGGGCCCG-GCGGCGg -3'
miRNA:   3'- -CCCCag----CGUCC--------CCCGGGCgCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 48487 0.72 0.158328
Target:  5'- cGGGUCGagcgcggcgcgcucCGGGGcggcgcGGCCCGCccacacgcuuacGCGGCGCg -3'
miRNA:   3'- cCCCAGC--------------GUCCC------CCGGGCG------------CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 74150 0.72 0.158701
Target:  5'- cGGGGcgaaugaUgGCGGcgccucucggcguGGGGCCCaugccGCGCGGCGCc -3'
miRNA:   3'- -CCCC-------AgCGUC-------------CCCCGGG-----CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 106678 0.72 0.159451
Target:  5'- cGGGcccuccaGCGGcGGcGGCCCgucGCGCGGCGCc -3'
miRNA:   3'- cCCCag-----CGUC-CC-CCGGG---CGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.