miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 135129 1.12 0.000162
Target:  5'- cGGGGUCGCAGGGGGCCCGCGCGGCGCg -3'
miRNA:   3'- -CCCCAGCGUCCCCCGGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 32316 1.12 0.000162
Target:  5'- cGGGGUCGCAGGGGGCCCGCGCGGCGCg -3'
miRNA:   3'- -CCCCAGCGUCCCCCGGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 94218 0.83 0.024255
Target:  5'- cGGcGGagcUCGCGgcGGGGcGCCCGCGCGGCGCc -3'
miRNA:   3'- -CC-CC---AGCGU--CCCC-CGGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 50045 0.8 0.039254
Target:  5'- cGGGG-CGCGGuGGcGGCCgcggguccgCGCGCGGCGCg -3'
miRNA:   3'- -CCCCaGCGUC-CC-CCGG---------GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 79559 0.8 0.045658
Target:  5'- uGGGGcUCGCGGGGGGCgCCGggcuCGCGGCc- -3'
miRNA:   3'- -CCCC-AGCGUCCCCCG-GGC----GCGCCGcg -5'
6482 5' -67.7 NC_001847.1 + 104180 0.79 0.049232
Target:  5'- aGGGGUacUAGGGGGCaCCGCGC-GCGCa -3'
miRNA:   3'- -CCCCAgcGUCCCCCG-GGCGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 2075 0.79 0.049232
Target:  5'- -cGGUgGCGGcgagcgccccgcGGGGCCCGCGCGGCGg -3'
miRNA:   3'- ccCCAgCGUC------------CCCCGGGCGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 134847 0.79 0.049232
Target:  5'- cGGGG-CGCGGGGacggcGCCCGCGCGG-GCu -3'
miRNA:   3'- -CCCCaGCGUCCCc----CGGGCGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 104888 0.79 0.049232
Target:  5'- -cGGUgGCGGcgagcgccccgcGGGGCCCGCGCGGCGg -3'
miRNA:   3'- ccCCAgCGUC------------CCCCGGGCGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 48829 0.79 0.049232
Target:  5'- cGGGccuugccgCGCGGGGGcGCcucggCCGCGCGGCGCg -3'
miRNA:   3'- cCCCa-------GCGUCCCC-CG-----GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 32034 0.79 0.049232
Target:  5'- cGGGG-CGCGGGGacggcGCCCGCGCGG-GCu -3'
miRNA:   3'- -CCCCaGCGUCCCc----CGGGCGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 81246 0.79 0.053078
Target:  5'- cGGGGccgUCGCgaggacGGGGGGCCCGCccgcccccGCGGCGg -3'
miRNA:   3'- -CCCC---AGCG------UCCCCCGGGCG--------CGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 43233 0.79 0.054424
Target:  5'- cGGuGG-CGguGGGGGCgCGCggGCGGCGCg -3'
miRNA:   3'- -CC-CCaGCguCCCCCGgGCG--CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 106790 0.78 0.060146
Target:  5'- aGGG-CGCcGGGGGCCCGgGC-GCGCg -3'
miRNA:   3'- cCCCaGCGuCCCCCGGGCgCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 33016 0.77 0.06812
Target:  5'- gGGGGgcgCGCGGGGcgaGGCgCGgaCGCGGCGCa -3'
miRNA:   3'- -CCCCa--GCGUCCC---CCGgGC--GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 76408 0.77 0.069833
Target:  5'- gGGGGcCGCGgcGGGGGCaCCcCGCGGCGg -3'
miRNA:   3'- -CCCCaGCGU--CCCCCG-GGcGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 125079 0.77 0.069833
Target:  5'- cGGGG-CGCu--GGGCCCGCGCGGC-Ca -3'
miRNA:   3'- -CCCCaGCGuccCCCGGGCGCGCCGcG- -5'
6482 5' -67.7 NC_001847.1 + 62482 0.77 0.071587
Target:  5'- cGGGGUCGCcGGcGGGCggCCGCGgGGUGg -3'
miRNA:   3'- -CCCCAGCGuCC-CCCG--GGCGCgCCGCg -5'
6482 5' -67.7 NC_001847.1 + 70701 0.77 0.073384
Target:  5'- cGGGcGgcgGCGGGGGcGCCCGCGgCGaGCGCg -3'
miRNA:   3'- -CCC-Cag-CGUCCCC-CGGGCGC-GC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 27749 0.76 0.081012
Target:  5'- cGGcGGUUGCGgcGGGGGgCUGUGCGGgGCg -3'
miRNA:   3'- -CC-CCAGCGU--CCCCCgGGCGCGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.