miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 16 0.66 0.398401
Target:  5'- cGGGGggCGCGGaGaaaaaaaaaauuuuuUCCGCGCGGCGCg -3'
miRNA:   3'- -CCCCa-GCGUCcCcc-------------GGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 37 0.68 0.280895
Target:  5'- cGGGGgggUGUuuuugggGGGGGGCggaaauuuCgGCGCGGCGg -3'
miRNA:   3'- -CCCCa--GCG-------UCCCCCG--------GgCGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 266 0.73 0.141295
Target:  5'- aGGGGcccgaGCccGGGGGccgccgaGCCCGCGCgGGCGCc -3'
miRNA:   3'- -CCCCag---CG--UCCCC-------CGGGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 354 0.69 0.269486
Target:  5'- cGGGcuUCGCGccccGGGGCCCGCcCcGCGCg -3'
miRNA:   3'- cCCC--AGCGUc---CCCCGGGCGcGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 759 0.66 0.369975
Target:  5'- aGGG-CG-AGGccGGCCCGCcgccgGCGGCGCc -3'
miRNA:   3'- cCCCaGCgUCCc-CCGGGCG-----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 858 0.68 0.309436
Target:  5'- aGGaGGagagcaccuccacgCGCGGcGGcGGCCCGCGCcGGgGCc -3'
miRNA:   3'- -CC-CCa-------------GCGUC-CC-CCGGGCGCG-CCgCG- -5'
6482 5' -67.7 NC_001847.1 + 1505 0.68 0.287673
Target:  5'- cGGGGUagagccgcgCGUAGGcGGCCUcgGCGC-GCGCg -3'
miRNA:   3'- -CCCCA---------GCGUCCcCCGGG--CGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 1917 0.69 0.246144
Target:  5'- cGGGG-CaGguGGcGaGGCUuagccggCGCGCGGCGCa -3'
miRNA:   3'- -CCCCaG-CguCC-C-CCGG-------GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 2075 0.79 0.049232
Target:  5'- -cGGUgGCGGcgagcgccccgcGGGGCCCGCGCGGCGg -3'
miRNA:   3'- ccCCAgCGUC------------CCCCGGGCGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 2170 0.67 0.333822
Target:  5'- cGGGGaagaGCGGGuGGUCCGCGagccGCGCc -3'
miRNA:   3'- -CCCCag--CGUCCcCCGGGCGCgc--CGCG- -5'
6482 5' -67.7 NC_001847.1 + 2209 0.67 0.32691
Target:  5'- cGGGG-CgGCAGuaGGCCgccagCGcCGCGGCGCu -3'
miRNA:   3'- -CCCCaG-CGUCccCCGG-----GC-GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 2299 0.66 0.414338
Target:  5'- cGGGGcCGcCGGGcggcauGGGCCCcagcacgcgggcggGCaGCGGCGg -3'
miRNA:   3'- -CCCCaGC-GUCC------CCCGGG--------------CG-CGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 2561 0.68 0.306812
Target:  5'- cGGGcuGUCuucgGCGcGGGcGCCUGCGCGGcCGCc -3'
miRNA:   3'- -CCC--CAG----CGUcCCC-CGGGCGCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 2756 0.66 0.37752
Target:  5'- -cGG-CGCGGcGGcGCCgGCGCcGGCGCc -3'
miRNA:   3'- ccCCaGCGUCcCC-CGGgCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 3256 0.7 0.225521
Target:  5'- -cGG-CgGCAGGGGcGCCgGCGCcGCGCg -3'
miRNA:   3'- ccCCaG-CGUCCCC-CGGgCGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 3294 0.66 0.385167
Target:  5'- -cGGcgCGCAGcucGGCgaGCGCGGCGCg -3'
miRNA:   3'- ccCCa-GCGUCcc-CCGggCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 3349 0.68 0.287673
Target:  5'- cGGGUagGCcauGGGGGCguaCGCGCGcCGCa -3'
miRNA:   3'- cCCCAg-CGu--CCCCCGg--GCGCGCcGCG- -5'
6482 5' -67.7 NC_001847.1 + 3447 0.7 0.219975
Target:  5'- gGGGGUCG-AGGcGGaagucgacagcaaGCgCGCGcCGGCGCg -3'
miRNA:   3'- -CCCCAGCgUCC-CC-------------CGgGCGC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 3756 0.67 0.343679
Target:  5'- cGGGGcagucccagaggcccUCGCGGGugucGCCCGCGCcgccgaaGCGCa -3'
miRNA:   3'- -CCCC---------------AGCGUCCcc--CGGGCGCGc------CGCG- -5'
6482 5' -67.7 NC_001847.1 + 3865 0.72 0.159451
Target:  5'- cGGGcccuccaGCGGcGGcGGCCCgucGCGCGGCGCc -3'
miRNA:   3'- cCCCag-----CGUC-CC-CCGGG---CGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.