miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 121191 0.74 0.114089
Target:  5'- cGGGagcggcacuugCGCGGGGcGGCCCcccugcCGCGGCGCg -3'
miRNA:   3'- cCCCa----------GCGUCCC-CCGGGc-----GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 36958 0.76 0.085104
Target:  5'- cGGGGgcugcggccagCGCGGGcgccggcgagcGGGCCCGCGCcgagcggcggcGGCGCg -3'
miRNA:   3'- -CCCCa----------GCGUCC-----------CCCGGGCGCG-----------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 13001 0.75 0.096215
Target:  5'- uGGGG--GUGGGGGGCCUGUGCcgagcaguagacGGCGCa -3'
miRNA:   3'- -CCCCagCGUCCCCCGGGCGCG------------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 42249 0.75 0.102023
Target:  5'- uGGcGUCGguGGuGGGCagcagcaccucgagcUCGCGCGGCGCc -3'
miRNA:   3'- cCC-CAGCguCC-CCCG---------------GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 47557 0.75 0.103526
Target:  5'- cGGG-CGCGGGGaGCCCG-GCGGcCGCg -3'
miRNA:   3'- cCCCaGCGUCCCcCGGGCgCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 107438 0.75 0.103526
Target:  5'- -cGG-CGCGGGcGGCCCGC-CGGCGCu -3'
miRNA:   3'- ccCCaGCGUCCcCCGGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 74238 0.75 0.105305
Target:  5'- cGGGGaCGCGguaugccuGcugccgccgcugcuGGGGCCCGCGCGcGCGCu -3'
miRNA:   3'- -CCCCaGCGU--------C--------------CCCCGGGCGCGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 130675 0.75 0.106077
Target:  5'- aGGGaCGCGGGGGGCgCCGaggaCGCGGaCGUc -3'
miRNA:   3'- cCCCaGCGUCCCCCG-GGC----GCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 33786 0.74 0.111357
Target:  5'- aGGGcuUCGC--GGGGCUgCGCGCGGCGCc -3'
miRNA:   3'- cCCC--AGCGucCCCCGG-GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16629 0.76 0.08283
Target:  5'- gGGGGgggCGCGGcggcuuugccgucGGGGcCCCGCGCcuacaGGCGCg -3'
miRNA:   3'- -CCCCa--GCGUC-------------CCCC-GGGCGCG-----CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 27749 0.76 0.081012
Target:  5'- cGGcGGUUGCGgcGGGGGgCUGUGCGGgGCg -3'
miRNA:   3'- -CC-CCAGCGU--CCCCCgGGCGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 62482 0.77 0.071587
Target:  5'- cGGGGUCGCcGGcGGGCggCCGCGgGGUGg -3'
miRNA:   3'- -CCCCAGCGuCC-CCCG--GGCGCgCCGCg -5'
6482 5' -67.7 NC_001847.1 + 94218 0.83 0.024255
Target:  5'- cGGcGGagcUCGCGgcGGGGcGCCCGCGCGGCGCc -3'
miRNA:   3'- -CC-CC---AGCGU--CCCC-CGGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 50045 0.8 0.039254
Target:  5'- cGGGG-CGCGGuGGcGGCCgcggguccgCGCGCGGCGCg -3'
miRNA:   3'- -CCCCaGCGUC-CC-CCGG---------GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 134847 0.79 0.049232
Target:  5'- cGGGG-CGCGGGGacggcGCCCGCGCGG-GCu -3'
miRNA:   3'- -CCCCaGCGUCCCc----CGGGCGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 104888 0.79 0.049232
Target:  5'- -cGGUgGCGGcgagcgccccgcGGGGCCCGCGCGGCGg -3'
miRNA:   3'- ccCCAgCGUC------------CCCCGGGCGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 48829 0.79 0.049232
Target:  5'- cGGGccuugccgCGCGGGGGcGCcucggCCGCGCGGCGCg -3'
miRNA:   3'- cCCCa-------GCGUCCCC-CG-----GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 43233 0.79 0.054424
Target:  5'- cGGuGG-CGguGGGGGCgCGCggGCGGCGCg -3'
miRNA:   3'- -CC-CCaGCguCCCCCGgGCG--CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 106790 0.78 0.060146
Target:  5'- aGGG-CGCcGGGGGCCCGgGC-GCGCg -3'
miRNA:   3'- cCCCaGCGuCCCCCGGGCgCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 76408 0.77 0.069833
Target:  5'- gGGGGcCGCGgcGGGGGCaCCcCGCGGCGg -3'
miRNA:   3'- -CCCCaGCGU--CCCCCG-GGcGCGCCGCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.