Results 1 - 20 of 467 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6482 | 5' | -67.7 | NC_001847.1 | + | 121191 | 0.74 | 0.114089 |
Target: 5'- cGGGagcggcacuugCGCGGGGcGGCCCcccugcCGCGGCGCg -3' miRNA: 3'- cCCCa----------GCGUCCC-CCGGGc-----GCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 36958 | 0.76 | 0.085104 |
Target: 5'- cGGGGgcugcggccagCGCGGGcgccggcgagcGGGCCCGCGCcgagcggcggcGGCGCg -3' miRNA: 3'- -CCCCa----------GCGUCC-----------CCCGGGCGCG-----------CCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 13001 | 0.75 | 0.096215 |
Target: 5'- uGGGG--GUGGGGGGCCUGUGCcgagcaguagacGGCGCa -3' miRNA: 3'- -CCCCagCGUCCCCCGGGCGCG------------CCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 42249 | 0.75 | 0.102023 |
Target: 5'- uGGcGUCGguGGuGGGCagcagcaccucgagcUCGCGCGGCGCc -3' miRNA: 3'- cCC-CAGCguCC-CCCG---------------GGCGCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 47557 | 0.75 | 0.103526 |
Target: 5'- cGGG-CGCGGGGaGCCCG-GCGGcCGCg -3' miRNA: 3'- cCCCaGCGUCCCcCGGGCgCGCC-GCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 107438 | 0.75 | 0.103526 |
Target: 5'- -cGG-CGCGGGcGGCCCGC-CGGCGCu -3' miRNA: 3'- ccCCaGCGUCCcCCGGGCGcGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 74238 | 0.75 | 0.105305 |
Target: 5'- cGGGGaCGCGguaugccuGcugccgccgcugcuGGGGCCCGCGCGcGCGCu -3' miRNA: 3'- -CCCCaGCGU--------C--------------CCCCGGGCGCGC-CGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 130675 | 0.75 | 0.106077 |
Target: 5'- aGGGaCGCGGGGGGCgCCGaggaCGCGGaCGUc -3' miRNA: 3'- cCCCaGCGUCCCCCG-GGC----GCGCC-GCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 33786 | 0.74 | 0.111357 |
Target: 5'- aGGGcuUCGC--GGGGCUgCGCGCGGCGCc -3' miRNA: 3'- cCCC--AGCGucCCCCGG-GCGCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 16629 | 0.76 | 0.08283 |
Target: 5'- gGGGGgggCGCGGcggcuuugccgucGGGGcCCCGCGCcuacaGGCGCg -3' miRNA: 3'- -CCCCa--GCGUC-------------CCCC-GGGCGCG-----CCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 27749 | 0.76 | 0.081012 |
Target: 5'- cGGcGGUUGCGgcGGGGGgCUGUGCGGgGCg -3' miRNA: 3'- -CC-CCAGCGU--CCCCCgGGCGCGCCgCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 62482 | 0.77 | 0.071587 |
Target: 5'- cGGGGUCGCcGGcGGGCggCCGCGgGGUGg -3' miRNA: 3'- -CCCCAGCGuCC-CCCG--GGCGCgCCGCg -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 94218 | 0.83 | 0.024255 |
Target: 5'- cGGcGGagcUCGCGgcGGGGcGCCCGCGCGGCGCc -3' miRNA: 3'- -CC-CC---AGCGU--CCCC-CGGGCGCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 50045 | 0.8 | 0.039254 |
Target: 5'- cGGGG-CGCGGuGGcGGCCgcggguccgCGCGCGGCGCg -3' miRNA: 3'- -CCCCaGCGUC-CC-CCGG---------GCGCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 134847 | 0.79 | 0.049232 |
Target: 5'- cGGGG-CGCGGGGacggcGCCCGCGCGG-GCu -3' miRNA: 3'- -CCCCaGCGUCCCc----CGGGCGCGCCgCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 104888 | 0.79 | 0.049232 |
Target: 5'- -cGGUgGCGGcgagcgccccgcGGGGCCCGCGCGGCGg -3' miRNA: 3'- ccCCAgCGUC------------CCCCGGGCGCGCCGCg -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 48829 | 0.79 | 0.049232 |
Target: 5'- cGGGccuugccgCGCGGGGGcGCcucggCCGCGCGGCGCg -3' miRNA: 3'- cCCCa-------GCGUCCCC-CG-----GGCGCGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 43233 | 0.79 | 0.054424 |
Target: 5'- cGGuGG-CGguGGGGGCgCGCggGCGGCGCg -3' miRNA: 3'- -CC-CCaGCguCCCCCGgGCG--CGCCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 106790 | 0.78 | 0.060146 |
Target: 5'- aGGG-CGCcGGGGGCCCGgGC-GCGCg -3' miRNA: 3'- cCCCaGCGuCCCCCGGGCgCGcCGCG- -5' |
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6482 | 5' | -67.7 | NC_001847.1 | + | 76408 | 0.77 | 0.069833 |
Target: 5'- gGGGGcCGCGgcGGGGGCaCCcCGCGGCGg -3' miRNA: 3'- -CCCCaGCGU--CCCCCG-GGcGCGCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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