Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6483 | 3' | -56.5 | NC_001847.1 | + | 134950 | 0.7 | 0.614166 |
Target: 5'- ---cGggGGcGGGGgcGGGGgcGGGGg -3' miRNA: 3'- uucuCuuCCuCCCCuuCCCCuuCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 134900 | 0.75 | 0.334789 |
Target: 5'- gGAGcGAGGGAGGaGGAgcgAGGGaGGAGGAGc -3' miRNA: 3'- -UUCuCUUCCUCC-CCU---UCCC-CUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 134867 | 0.78 | 0.25198 |
Target: 5'- gAGGAGGAGcGAGGGaGGAGGagcgaGGGAGGAGg -3' miRNA: 3'- -UUCUCUUC-CUCCC-CUUCC-----CCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 134825 | 0.78 | 0.25198 |
Target: 5'- gAGGAGGAGcGAGGGaGGAGGagcgaGGGAGGAGg -3' miRNA: 3'- -UUCUCUUC-CUCCC-CUUCC-----CCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 134783 | 0.78 | 0.25198 |
Target: 5'- gAGGAGGAGcGAGGGaGGAGGagcgaGGGAGGAGg -3' miRNA: 3'- -UUCUCUUC-CUCCC-CUUCC-----CCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 134741 | 0.78 | 0.25198 |
Target: 5'- gAGGAGGAGcGAGGGaGGAGGagcgaGGGAGGAGg -3' miRNA: 3'- -UUCUCUUC-CUCCC-CUUCC-----CCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 132665 | 0.83 | 0.123226 |
Target: 5'- gAGGAGGAGGAGGaGGAagaAGGGGAcGGGGa -3' miRNA: 3'- -UUCUCUUCCUCC-CCU---UCCCCUuCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 132633 | 0.66 | 0.8218 |
Target: 5'- cGAGGGAAGGAagaaGGGccGAGGaGGAGGAGn -3' miRNA: 3'- -UUCUCUUCCUc---CCC--UUCCcCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 132563 | 0.67 | 0.794956 |
Target: 5'- gAAGAGGAGGAagaGGaGGAagAGGaGGAAGaGGGc -3' miRNA: 3'- -UUCUCUUCCU---CC-CCU--UCC-CCUUC-CUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 132527 | 0.7 | 0.603782 |
Target: 5'- gAAGAGGAGGAagaGGaGGAaaAGGaGGAagAGGAGg -3' miRNA: 3'- -UUCUCUUCCU---CC-CCU--UCC-CCU--UCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 132487 | 0.75 | 0.374733 |
Target: 5'- cGAGGcGGAGGAcGGGGAGGacGGGGAGGAc -3' miRNA: 3'- -UUCU-CUUCCU-CCCCUUC--CCCUUCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 130035 | 1.07 | 0.002804 |
Target: 5'- aAAGAGAAGGAGGGGAAGGGGAAGGAGa -3' miRNA: 3'- -UUCUCUUCCUCCCCUUCCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 130005 | 0.83 | 0.116862 |
Target: 5'- cGGuGggGGuGGGGggGGGGAAGGGa -3' miRNA: 3'- uUCuCuuCCuCCCCuuCCCCUUCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 129266 | 0.75 | 0.374733 |
Target: 5'- -cGAGGcAGGGGcGGGAAuGGGGAGGGGa -3' miRNA: 3'- uuCUCU-UCCUC-CCCUU-CCCCUUCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 129166 | 0.84 | 0.102269 |
Target: 5'- cAGGGAAGaAGGGGGaaAGGGGAAGGAGg -3' miRNA: 3'- uUCUCUUCcUCCCCU--UCCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 129024 | 0.69 | 0.69602 |
Target: 5'- -uGGGcGGGAagcGGGGAGucccaauGGGGAGGGGGu -3' miRNA: 3'- uuCUCuUCCU---CCCCUU-------CCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 128913 | 0.7 | 0.617285 |
Target: 5'- gGAGGGAgcaguggcgcugggcAGGAagcGGGGAGucccaauGGGGAGGGGGu -3' miRNA: 3'- -UUCUCU---------------UCCU---CCCCUU-------CCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 128704 | 0.84 | 0.096927 |
Target: 5'- aGGGAGGAGGAGcGGGGugcggggugcgAGGGGGAGGGGg -3' miRNA: 3'- -UUCUCUUCCUC-CCCU-----------UCCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 127866 | 0.84 | 0.099564 |
Target: 5'- cGGAGcAAGGAacgauGGGGggGGGGAGGGGGa -3' miRNA: 3'- uUCUC-UUCCU-----CCCCuuCCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 127584 | 0.87 | 0.059436 |
Target: 5'- --aGGggGGAGGGGAGGGGGggGGGc -3' miRNA: 3'- uucUCuuCCUCCCCUUCCCCuuCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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