miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 3' -56.5 NC_001847.1 + 54540 0.66 0.83882
Target:  5'- cGGcGggGGcGGGGgcGGGGAAGa-- -3'
miRNA:   3'- uUCuCuuCCuCCCCuuCCCCUUCcuc -5'
6483 3' -56.5 NC_001847.1 + 4861 0.71 0.542184
Target:  5'- cAGGGGAGGGGGGGggGcGGcGGGcAGc -3'
miRNA:   3'- uUCUCUUCCUCCCCuuCcCCuUCC-UC- -5'
6483 3' -56.5 NC_001847.1 + 32929 0.73 0.47321
Target:  5'- cGGGAGGAGGccggcggcGGGGccGGGGGGgcGGAGg -3'
miRNA:   3'- -UUCUCUUCCu-------CCCC--UUCCCCuuCCUC- -5'
6483 3' -56.5 NC_001847.1 + 27222 1.07 0.002804
Target:  5'- aAAGAGAAGGAGGGGAAGGGGAAGGAGa -3'
miRNA:   3'- -UUCUCUUCCUCCCCUUCCCCUUCCUC- -5'
6483 3' -56.5 NC_001847.1 + 29750 0.67 0.794956
Target:  5'- gAAGAGGAGGAagaGGaGGAagAGGaGGAAGaGGGc -3'
miRNA:   3'- -UUCUCUUCCU---CC-CCU--UCC-CCUUC-CUC- -5'
6483 3' -56.5 NC_001847.1 + 8993 0.67 0.785692
Target:  5'- cAGAcGggGGuGGGGGcuGGGuGGgcGGAGc -3'
miRNA:   3'- uUCU-CuuCCuCCCCU--UCC-CCuuCCUC- -5'
6483 3' -56.5 NC_001847.1 + 79544 0.68 0.717384
Target:  5'- cGGGGccGGGGGGGcuGGGGcucgcGGGGGg -3'
miRNA:   3'- uUCUCuuCCUCCCCuuCCCCu----UCCUC- -5'
6483 3' -56.5 NC_001847.1 + 22747 0.69 0.697044
Target:  5'- gGGGGGAuGGGGGcgaGGGAucGGGGGGAuGGGGg -3'
miRNA:   3'- -UUCUCU-UCCUC---CCCU--UCCCCUU-CCUC- -5'
6483 3' -56.5 NC_001847.1 + 838 0.69 0.655763
Target:  5'- -cGAGGAcGAGGaGGAGGaGGaGGAGGAGa -3'
miRNA:   3'- uuCUCUUcCUCC-CCUUC-CC-CUUCCUC- -5'
6483 3' -56.5 NC_001847.1 + 29714 0.7 0.603782
Target:  5'- gAAGAGGAGGAagaGGaGGAaaAGGaGGAagAGGAGg -3'
miRNA:   3'- -UUCUCUUCCU---CC-CCU--UCC-CCU--UCCUC- -5'
6483 3' -56.5 NC_001847.1 + 26100 0.7 0.617285
Target:  5'- gGAGGGAgcaguggcgcugggcAGGAagcGGGGAGucccaauGGGGAGGGGGu -3'
miRNA:   3'- -UUCUCU---------------UCCU---CCCCUU-------CCCCUUCCUC- -5'
6483 3' -56.5 NC_001847.1 + 6841 0.69 0.676479
Target:  5'- -cGGGGAGuuGGGGggGGGGgcGGc- -3'
miRNA:   3'- uuCUCUUCcuCCCCuuCCCCuuCCuc -5'
6483 3' -56.5 NC_001847.1 + 29820 0.66 0.8218
Target:  5'- cGAGGGAAGGAagaaGGGccGAGGaGGAGGAGn -3'
miRNA:   3'- -UUCUCUUCCUc---CCC--UUCCcCUUCCUC- -5'
6483 3' -56.5 NC_001847.1 + 32137 0.7 0.614166
Target:  5'- ---cGggGGcGGGGgcGGGGgcGGGGg -3'
miRNA:   3'- uucuCuuCCuCCCCuuCCCCuuCCUC- -5'
6483 3' -56.5 NC_001847.1 + 27906 0.67 0.804068
Target:  5'- -cGAGGccgAGGGGGcGGAGGGcGcGGAGGAc -3'
miRNA:   3'- uuCUCU---UCCUCC-CCUUCC-C-CUUCCUc -5'
6483 3' -56.5 NC_001847.1 + 26211 0.69 0.69602
Target:  5'- -uGGGcGGGAagcGGGGAGucccaauGGGGAGGGGGu -3'
miRNA:   3'- uuCUCuUCCU---CCCCUU-------CCCCUUCCUC- -5'
6483 3' -56.5 NC_001847.1 + 23376 0.7 0.603782
Target:  5'- cGAGAuGAGGGuGGGGGcuGGGuGGgcGGAGc -3'
miRNA:   3'- -UUCU-CUUCCuCCCCU--UCC-CCuuCCUC- -5'
6483 3' -56.5 NC_001847.1 + 68207 0.72 0.482808
Target:  5'- gGGGAGAcGuGAaaagGGGGAAGGGG-GGGAGg -3'
miRNA:   3'- -UUCUCUuC-CU----CCCCUUCCCCuUCCUC- -5'
6483 3' -56.5 NC_001847.1 + 32774 0.67 0.794956
Target:  5'- gAGGAGAucccugugGGGGGaGGGccGGGGgcGGAc -3'
miRNA:   3'- -UUCUCU--------UCCUC-CCCuuCCCCuuCCUc -5'
6483 3' -56.5 NC_001847.1 + 33856 0.68 0.717384
Target:  5'- gGAGAGAccgcGGGcuGGGGGgcGGGcaguGAGGAGg -3'
miRNA:   3'- -UUCUCU----UCC--UCCCCuuCCCc---UUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.