Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6483 | 3' | -56.5 | NC_001847.1 | + | 21381 | 0.8 | 0.177037 |
Target: 5'- nGGGGAGGGAGGGGAaggAGGGGAuucgggccggccgAGGAu -3' miRNA: 3'- uUCUCUUCCUCCCCU---UCCCCU-------------UCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 21571 | 0.73 | 0.47321 |
Target: 5'- gGGGAGAGGGcGGGaGAGGGGGccgcGGGGc -3' miRNA: 3'- -UUCUCUUCCuCCC-CUUCCCCuu--CCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 22672 | 0.74 | 0.417782 |
Target: 5'- cGAGGGAucGGGGGGAugGGGGcGAGGGAu -3' miRNA: 3'- -UUCUCUucCUCCCCU--UCCC-CUUCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 22716 | 0.74 | 0.417782 |
Target: 5'- cGAGGGAucGGGGGGAugGGGGcGAGGGAu -3' miRNA: 3'- -UUCUCUucCUCCCCU--UCCC-CUUCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 22747 | 0.69 | 0.697044 |
Target: 5'- gGGGGGAuGGGGGcgaGGGAucGGGGGGAuGGGGg -3' miRNA: 3'- -UUCUCU-UCCUC---CCCU--UCCCCUU-CCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 22782 | 0.76 | 0.291088 |
Target: 5'- cGAGGGAucGGGGGGAuGGGGAuGGGGg -3' miRNA: 3'- -UUCUCUucCUCCCCUuCCCCUuCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 23376 | 0.7 | 0.603782 |
Target: 5'- cGAGAuGAGGGuGGGGGcuGGGuGGgcGGAGc -3' miRNA: 3'- -UUCU-CUUCCuCCCCU--UCC-CCuuCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 24771 | 0.87 | 0.059436 |
Target: 5'- --aGGggGGAGGGGAGGGGGggGGGc -3' miRNA: 3'- uucUCuuCCUCCCCUUCCCCuuCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 25053 | 0.84 | 0.099564 |
Target: 5'- cGGAGcAAGGAacgauGGGGggGGGGAGGGGGa -3' miRNA: 3'- uUCUC-UUCCU-----CCCCuuCCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 25891 | 0.84 | 0.094355 |
Target: 5'- aGGGAGGAGGAGcGGGGugcggggugcgaGGGGGAGGGGGg -3' miRNA: 3'- -UUCUCUUCCUC-CCCU------------UCCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 26100 | 0.7 | 0.617285 |
Target: 5'- gGAGGGAgcaguggcgcugggcAGGAagcGGGGAGucccaauGGGGAGGGGGu -3' miRNA: 3'- -UUCUCU---------------UCCU---CCCCUU-------CCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 26211 | 0.69 | 0.69602 |
Target: 5'- -uGGGcGGGAagcGGGGAGucccaauGGGGAGGGGGu -3' miRNA: 3'- uuCUCuUCCU---CCCCUU-------CCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 26353 | 0.84 | 0.102269 |
Target: 5'- cAGGGAAGaAGGGGGaaAGGGGAAGGAGg -3' miRNA: 3'- uUCUCUUCcUCCCCU--UCCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 26453 | 0.75 | 0.374733 |
Target: 5'- -cGAGGcAGGGGcGGGAAuGGGGAGGGGa -3' miRNA: 3'- uuCUCU-UCCUC-CCCUU-CCCCUUCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 27192 | 0.83 | 0.116862 |
Target: 5'- cGGuGggGGuGGGGggGGGGAAGGGa -3' miRNA: 3'- uUCuCuuCCuCCCCuuCCCCUUCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 27222 | 1.07 | 0.002804 |
Target: 5'- aAAGAGAAGGAGGGGAAGGGGAAGGAGa -3' miRNA: 3'- -UUCUCUUCCUCCCCUUCCCCUUCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 27906 | 0.67 | 0.804068 |
Target: 5'- -cGAGGccgAGGGGGcGGAGGGcGcGGAGGAc -3' miRNA: 3'- uuCUCU---UCCUCC-CCUUCC-C-CUUCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 29674 | 0.75 | 0.374733 |
Target: 5'- cGAGGcGGAGGAcGGGGAGGacGGGGAGGAc -3' miRNA: 3'- -UUCU-CUUCCU-CCCCUUC--CCCUUCCUc -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 29714 | 0.7 | 0.603782 |
Target: 5'- gAAGAGGAGGAagaGGaGGAaaAGGaGGAagAGGAGg -3' miRNA: 3'- -UUCUCUUCCU---CC-CCU--UCC-CCU--UCCUC- -5' |
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6483 | 3' | -56.5 | NC_001847.1 | + | 29750 | 0.67 | 0.794956 |
Target: 5'- gAAGAGGAGGAagaGGaGGAagAGGaGGAAGaGGGc -3' miRNA: 3'- -UUCUCUUCCU---CC-CCU--UCC-CCUUC-CUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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