miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 115879 0.74 0.104375
Target:  5'- uCGC-GCCGCCgGCcagaaCCGGUCCGCCGg -3'
miRNA:   3'- -GUGaCGGCGGgCGag---GGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 102352 0.75 0.09229
Target:  5'- aCGC-GCCGUCCGCcCCCGGCCCuCCc -3'
miRNA:   3'- -GUGaCGGCGGGCGaGGGCCGGGcGGc -5'
6483 5' -67.8 NC_001847.1 + 134712 0.75 0.094596
Target:  5'- uGCUGCCGCcgccgCCGC-CCCcGCCCGCCc -3'
miRNA:   3'- gUGACGGCG-----GGCGaGGGcCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 106139 0.75 0.094596
Target:  5'- cCGCUGCCGCCgGCg-CCGGCCU-CCGg -3'
miRNA:   3'- -GUGACGGCGGgCGagGGCCGGGcGGC- -5'
6483 5' -67.8 NC_001847.1 + 62437 0.75 0.096718
Target:  5'- uGCUGCCGCCCaccgggcggccGCUcucCCCGGCCUcagcaggGCCGg -3'
miRNA:   3'- gUGACGGCGGG-----------CGA---GGGCCGGG-------CGGC- -5'
6483 5' -67.8 NC_001847.1 + 88640 0.75 0.096956
Target:  5'- gCGCUGCCGCUgGCaacgCUCGGCCaCGCUGc -3'
miRNA:   3'- -GUGACGGCGGgCGa---GGGCCGG-GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 131862 0.75 0.096956
Target:  5'- aGCUGCgCGCCgUGCUCgCCGGCCgcgcggCGCCGg -3'
miRNA:   3'- gUGACG-GCGG-GCGAG-GGCCGG------GCGGC- -5'
6483 5' -67.8 NC_001847.1 + 102231 0.74 0.099372
Target:  5'- uCGCUcCCGUCCGCggcCCCGGCuuccCCGCCGg -3'
miRNA:   3'- -GUGAcGGCGGGCGa--GGGCCG----GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 92405 0.74 0.10412
Target:  5'- uGCUGuCCGcCCCGCcgCCCGcgcggccGCCCGCCGc -3'
miRNA:   3'- gUGAC-GGC-GGGCGa-GGGC-------CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 494 0.75 0.085689
Target:  5'- cCGC-GCCuccgcGCCUGCUgCCGGCCCGCCc -3'
miRNA:   3'- -GUGaCGG-----CGGGCGAgGGCCGGGCGGc -5'
6483 5' -67.8 NC_001847.1 + 106045 0.76 0.077584
Target:  5'- gCGC-GCCGCCCGCg-CCGuGCUCGCCGg -3'
miRNA:   3'- -GUGaCGGCGGGCGagGGC-CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 19647 0.76 0.071992
Target:  5'- gCGCgGCCGCuuGCgggCCCGGC-CGCCGg -3'
miRNA:   3'- -GUGaCGGCGggCGa--GGGCCGgGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 77200 0.81 0.031256
Target:  5'- gCGCUGCUGCCCGCgacggagCCgCGGgCCGCCGg -3'
miRNA:   3'- -GUGACGGCGGGCGa------GG-GCCgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 77475 0.8 0.041356
Target:  5'- gCGCcgGgCGCCCGg-CCCGGCCCGCCGg -3'
miRNA:   3'- -GUGa-CgGCGGGCgaGGGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 48760 0.79 0.043508
Target:  5'- aGCcGCgCGCCCGCcgCCgCGGCCCGCCGc -3'
miRNA:   3'- gUGaCG-GCGGGCGa-GG-GCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 9340 0.79 0.04577
Target:  5'- aGCUGCaCGCCCGC---CGGCCCGCCGa -3'
miRNA:   3'- gUGACG-GCGGGCGaggGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 9623 0.79 0.046944
Target:  5'- aGCUG-CGCCCGCcgccgCgCCGGCCCGCCGc -3'
miRNA:   3'- gUGACgGCGGGCGa----G-GGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 81378 0.78 0.057448
Target:  5'- uGCUGCCGCCCucGCcgCCuCGGgCCGCCGg -3'
miRNA:   3'- gUGACGGCGGG--CGa-GG-GCCgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 66522 0.78 0.058912
Target:  5'- gCGC-GCCGCCuUGCggucCCCGGCCCGCUGg -3'
miRNA:   3'- -GUGaCGGCGG-GCGa---GGGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 10433 0.77 0.066788
Target:  5'- gCGCUGCCGCCCccGCgCCCGGCUCcccugGCCGc -3'
miRNA:   3'- -GUGACGGCGGG--CGaGGGCCGGG-----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.