miRNA display CGI


Results 1 - 20 of 487 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 129929 1.08 0.000449
Target:  5'- gCCCCGCCGGCCGCCGCGGCGAGAGAGc -3'
miRNA:   3'- -GGGGCGGCCGGCGGCGCCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 27116 1.08 0.000449
Target:  5'- gCCCCGCCGGCCGCCGCGGCGAGAGAGc -3'
miRNA:   3'- -GGGGCGGCCGGCGGCGCCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 132716 0.91 0.008131
Target:  5'- gCCCUGCCGGCCGCCGCGGgggccccuCGGGGGAGg -3'
miRNA:   3'- -GGGGCGGCCGGCGGCGCC--------GCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 29903 0.91 0.008344
Target:  5'- gCCCUGCCGGCCGCCGCGGggggccccuCGGGGGAGg -3'
miRNA:   3'- -GGGGCGGCCGGCGGCGCC---------GCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 3933 0.85 0.021058
Target:  5'- gCCCgCGCUGG-CGCCGCGGCGGGGGGGg -3'
miRNA:   3'- -GGG-GCGGCCgGCGGCGCCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 106746 0.85 0.021058
Target:  5'- gCCCgCGCUGG-CGCCGCGGCGGGGGGGg -3'
miRNA:   3'- -GGG-GCGGCCgGCGGCGCCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 66358 0.85 0.021604
Target:  5'- gCUCGCgCGGCCGCCGCGGCGAuGGAGc -3'
miRNA:   3'- gGGGCG-GCCGGCGGCGCCGCUcUCUC- -5'
6484 3' -66.3 NC_001847.1 + 107631 0.83 0.034211
Target:  5'- uCCCCGCC-GCCGCCGCGGCGGcGGccGAGg -3'
miRNA:   3'- -GGGGCGGcCGGCGGCGCCGCU-CU--CUC- -5'
6484 3' -66.3 NC_001847.1 + 12617 0.82 0.0373
Target:  5'- cCCCCGCuccucaacauggaggCGGCCGCUGCGGCugcggGGGAGAGg -3'
miRNA:   3'- -GGGGCG---------------GCCGGCGGCGCCG-----CUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 64452 0.81 0.045227
Target:  5'- cCCCCGCC-GCCGcCCGCGGCGGcgcGGGGGg -3'
miRNA:   3'- -GGGGCGGcCGGC-GGCGCCGCU---CUCUC- -5'
6484 3' -66.3 NC_001847.1 + 120076 0.81 0.047572
Target:  5'- cUCCUGCCGaGCCGCgCGgGGCGGGAGAu -3'
miRNA:   3'- -GGGGCGGC-CGGCG-GCgCCGCUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 83132 0.8 0.051315
Target:  5'- uCCUCGgCGGCCGCCGCGGCGucGGGc -3'
miRNA:   3'- -GGGGCgGCCGGCGGCGCCGCucUCUc -5'
6484 3' -66.3 NC_001847.1 + 128466 0.79 0.062749
Target:  5'- gCCCgGCCGGCCGCCGCGGCc------ -3'
miRNA:   3'- -GGGgCGGCCGGCGGCGCCGcucucuc -5'
6484 3' -66.3 NC_001847.1 + 34131 0.79 0.067642
Target:  5'- gCCUGCCgcgguGGCCGCCGCGGCGAGcgcgcugcgcGAGg -3'
miRNA:   3'- gGGGCGG-----CCGGCGGCGCCGCUCu---------CUC- -5'
6484 3' -66.3 NC_001847.1 + 93272 0.78 0.07093
Target:  5'- gCCUGCUGGUCGCCggcaaccugcaauGUGGCGAGGGGGa -3'
miRNA:   3'- gGGGCGGCCGGCGG-------------CGCCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 5202 0.77 0.091139
Target:  5'- cCCUCGCCGGCucucuCGCCGCGGCGGccGGcGGGg -3'
miRNA:   3'- -GGGGCGGCCG-----GCGGCGCCGCU--CU-CUC- -5'
6484 3' -66.3 NC_001847.1 + 108015 0.77 0.091139
Target:  5'- cCCUCGCCGGCucucuCGCCGCGGCGGccGGcGGGg -3'
miRNA:   3'- -GGGGCGGCCG-----GCGGCGCCGCU--CU-CUC- -5'
6484 3' -66.3 NC_001847.1 + 76850 0.77 0.091139
Target:  5'- gCCUGCCGGCCGCCGCcgucgccgcGGcCGAGcacauGGAGg -3'
miRNA:   3'- gGGGCGGCCGGCGGCG---------CC-GCUC-----UCUC- -5'
6484 3' -66.3 NC_001847.1 + 909 0.76 0.095743
Target:  5'- -gCCGCCGGCCGCCGCccgccGGCGccGGGAa -3'
miRNA:   3'- ggGGCGGCCGGCGGCG-----CCGCu-CUCUc -5'
6484 3' -66.3 NC_001847.1 + 97770 0.76 0.095743
Target:  5'- -gCCGCCGGCCGCCaGCa--GAGAGAGg -3'
miRNA:   3'- ggGGCGGCCGGCGG-CGccgCUCUCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.