miRNA display CGI


Results 61 - 80 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 15239 0.68 0.363579
Target:  5'- aCgCGCCGGCgGCgGCGGCGGc---- -3'
miRNA:   3'- gGgGCGGCCGgCGgCGCCGCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 15535 0.67 0.410129
Target:  5'- uCCUCGCgGGCCucgucgucGCCggGUGGCGcGGGGGa -3'
miRNA:   3'- -GGGGCGgCCGG--------CGG--CGCCGCuCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 15779 0.74 0.151774
Target:  5'- uUUCGCCGGCgGCaagcgccgCGCGGCGGGAGGc -3'
miRNA:   3'- gGGGCGGCCGgCG--------GCGCCGCUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 15925 0.73 0.162593
Target:  5'- gCCCCGCCgccccgcGGUgGCCGCGGCGccGAcGAGc -3'
miRNA:   3'- -GGGGCGG-------CCGgCGGCGCCGCu-CU-CUC- -5'
6484 3' -66.3 NC_001847.1 + 15984 0.76 0.110641
Target:  5'- gCCCCGCCgccccgcGGCgGCCGCGGCGccGAcGAGc -3'
miRNA:   3'- -GGGGCGG-------CCGgCGGCGCCGCu-CU-CUC- -5'
6484 3' -66.3 NC_001847.1 + 16044 0.71 0.21503
Target:  5'- gCCCCGCCgccccgcGGCgGCCGCGGCGccucugcuGGGc -3'
miRNA:   3'- -GGGGCGG-------CCGgCGGCGCCGCucu-----CUC- -5'
6484 3' -66.3 NC_001847.1 + 18688 0.67 0.405309
Target:  5'- gCCCCGCagcaCGGCCcgcgucaccgccagcGCCGCGGgGAGc--- -3'
miRNA:   3'- -GGGGCG----GCCGG---------------CGGCGCCgCUCucuc -5'
6484 3' -66.3 NC_001847.1 + 19036 0.69 0.294467
Target:  5'- aCCCCGCCGGCagGCC-CGGCGu----- -3'
miRNA:   3'- -GGGGCGGCCGg-CGGcGCCGCucucuc -5'
6484 3' -66.3 NC_001847.1 + 19393 0.76 0.111999
Target:  5'- uCCCCGCuCGGCU-CCGCGGCGAcgcagcaggcaaagcGGGAGc -3'
miRNA:   3'- -GGGGCG-GCCGGcGGCGCCGCU---------------CUCUC- -5'
6484 3' -66.3 NC_001847.1 + 19720 0.68 0.334643
Target:  5'- gCCCCGCgacgagguUGGCCGgaCGCGGCGGGc--- -3'
miRNA:   3'- -GGGGCG--------GCCGGCg-GCGCCGCUCucuc -5'
6484 3' -66.3 NC_001847.1 + 19933 0.66 0.457629
Target:  5'- aCCUGCCGcaccuuuugcagcaGCCGCCGaauccCGAGGGGGa -3'
miRNA:   3'- gGGGCGGC--------------CGGCGGCgcc--GCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 20034 0.69 0.281937
Target:  5'- gCCCUG-CGGCCGCCGCccugGGCGcGGGc- -3'
miRNA:   3'- -GGGGCgGCCGGCGGCG----CCGCuCUCuc -5'
6484 3' -66.3 NC_001847.1 + 20766 0.68 0.363579
Target:  5'- cCUUCGUCGGCgCGCaGauGCGAGGGGGg -3'
miRNA:   3'- -GGGGCGGCCG-GCGgCgcCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 21502 0.66 0.460211
Target:  5'- aUuuGCCgGGCgCGCCuCGGCGGGGGc- -3'
miRNA:   3'- gGggCGG-CCG-GCGGcGCCGCUCUCuc -5'
6484 3' -66.3 NC_001847.1 + 21739 0.71 0.236031
Target:  5'- gCCggCGCCGGCC-CgCGCGcGCGGGGGGGc -3'
miRNA:   3'- gGG--GCGGCCGGcG-GCGC-CGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 21945 0.67 0.410129
Target:  5'- -aCCG-CGGCuCGCgGCGGCaccGGGGGGGg -3'
miRNA:   3'- ggGGCgGCCG-GCGgCGCCG---CUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 22599 0.66 0.477615
Target:  5'- gCCCGcCCGGUCG-CGUGGCaAGcGAGu -3'
miRNA:   3'- gGGGC-GGCCGGCgGCGCCGcUCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 23723 0.69 0.294467
Target:  5'- cCCCCGCCcccGGCCgagcGCCGCcccuGGCGGGGc-- -3'
miRNA:   3'- -GGGGCGG---CCGG----CGGCG----CCGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 24237 0.66 0.451636
Target:  5'- cUCCaCGuUCaGCCGCCgcGCGGCGGGcGAGa -3'
miRNA:   3'- -GGG-GC-GGcCGGCGG--CGCCGCUCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 24381 0.71 0.22
Target:  5'- aCCCGCauggcgcgaacucCGGCgCGgCGCGcGCGGGAGGGu -3'
miRNA:   3'- gGGGCG-------------GCCG-GCgGCGC-CGCUCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.