miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 5' -52.6 NC_001847.1 + 129966 1.04 0.00884
Target:  5'- cUUCUCCCGCGCCGCGGUAAAACAAAAa -3'
miRNA:   3'- -AAGAGGGCGCGGCGCCAUUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 27153 1.04 0.00884
Target:  5'- cUUCUCCCGCGCCGCGGUAAAACAAAAa -3'
miRNA:   3'- -AAGAGGGCGCGGCGCCAUUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 124282 0.78 0.380985
Target:  5'- -cCUCCCGCcCCGCGGgcGAAUAAAAc -3'
miRNA:   3'- aaGAGGGCGcGGCGCCauUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 21469 0.78 0.380985
Target:  5'- -cCUCCCGCcCCGCGGgcGAAUAAAAc -3'
miRNA:   3'- aaGAGGGCGcGGCGCCauUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 59386 0.76 0.494387
Target:  5'- gUUCaCCCGCGCgGCGGgcGAGCAGu- -3'
miRNA:   3'- -AAGaGGGCGCGgCGCCauUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 118839 0.75 0.525131
Target:  5'- ---aCCCGCGCCGCGGgu-GACGGu- -3'
miRNA:   3'- aagaGGGCGCGGCGCCauuUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 14318 0.74 0.588534
Target:  5'- -gCUCCCGCuGCuCGCGGUGGGGCc--- -3'
miRNA:   3'- aaGAGGGCG-CG-GCGCCAUUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 46580 0.73 0.663931
Target:  5'- aUCUCUCGCGCCGCGcgcGAGCGc-- -3'
miRNA:   3'- aAGAGGGCGCGGCGCcauUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 5049 0.73 0.674664
Target:  5'- gUCccagCCCGCGUCGCGGUcgGGCGc-- -3'
miRNA:   3'- aAGa---GGGCGCGGCGCCAuuUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 10510 0.72 0.700248
Target:  5'- ---cCCCGCGCUgcugcgggccauggaGCGGUGGAACGAGGa -3'
miRNA:   3'- aagaGGGCGCGG---------------CGCCAUUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 29315 0.72 0.717108
Target:  5'- cUCggcgcggCCCGCGaCGCGGUGGAGCGc-- -3'
miRNA:   3'- aAGa------GGGCGCgGCGCCAUUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 132128 0.72 0.717108
Target:  5'- cUCggcgcggCCCGCGaCGCGGUGGAGCGc-- -3'
miRNA:   3'- aAGa------GGGCGCgGCGCCAUUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 132412 0.71 0.737888
Target:  5'- -gCUCCCGCccugcgcuCCGUGGUGGGGCAGGu -3'
miRNA:   3'- aaGAGGGCGc-------GGCGCCAUUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 33722 0.71 0.737888
Target:  5'- -gCUCUCGgaGCCGCGGcggGAGACGAGAc -3'
miRNA:   3'- aaGAGGGCg-CGGCGCCa--UUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 68738 0.71 0.74813
Target:  5'- gUCagCCCGCGCCGCGGauguGCGc-- -3'
miRNA:   3'- aAGa-GGGCGCGGCGCCauuuUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 30575 0.71 0.778133
Target:  5'- -cCUUCCGCGgCGCGGUGGAGu---- -3'
miRNA:   3'- aaGAGGGCGCgGCGCCAUUUUguuuu -5'
6484 5' -52.6 NC_001847.1 + 133388 0.71 0.778133
Target:  5'- -cCUUCCGCGgCGCGGUGGAGu---- -3'
miRNA:   3'- aaGAGGGCGCgGCGCCAUUUUguuuu -5'
6484 5' -52.6 NC_001847.1 + 14762 0.71 0.778133
Target:  5'- gUCgCCCGCGgCGUGGUAGcGCAGc- -3'
miRNA:   3'- aAGaGGGCGCgGCGCCAUUuUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 99690 0.7 0.787858
Target:  5'- -cCUCUCGCGCCGCGGcc--GCGu-- -3'
miRNA:   3'- aaGAGGGCGCGGCGCCauuuUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 15063 0.7 0.797427
Target:  5'- aUCUCCCGCcCCGCGcGgcucGGCAGGAg -3'
miRNA:   3'- aAGAGGGCGcGGCGC-Cauu-UUGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.