miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 5' -52.6 NC_001847.1 + 1760 0.7 0.825097
Target:  5'- -aCUCcaCCGCGCCGCGG-AAGGCc--- -3'
miRNA:   3'- aaGAG--GGCGCGGCGCCaUUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 1974 0.66 0.956493
Target:  5'- ---gCCCGCGcCCGCgcaGGUAgcAGGCAGAAa -3'
miRNA:   3'- aagaGGGCGC-GGCG---CCAU--UUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 5049 0.73 0.674664
Target:  5'- gUCccagCCCGCGUCGCGGUcgGGCGc-- -3'
miRNA:   3'- aAGa---GGGCGCGGCGCCAuuUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 6357 0.68 0.902804
Target:  5'- ----aCCGCGCCGCGGgcGuagccgcugcggcAGCAGAAg -3'
miRNA:   3'- aagagGGCGCGGCGCCauU-------------UUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 8971 0.67 0.922146
Target:  5'- cUCaUCUCGgGCCGgGGgcGGGCAGAc -3'
miRNA:   3'- aAG-AGGGCgCGGCgCCauUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 10510 0.72 0.700248
Target:  5'- ---cCCCGCGCUgcugcgggccauggaGCGGUGGAACGAGGa -3'
miRNA:   3'- aagaGGGCGCGG---------------CGCCAUUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 12481 0.69 0.859224
Target:  5'- -cUUCCCGCGUgGCGGcgGGGGCGGc- -3'
miRNA:   3'- aaGAGGGCGCGgCGCCa-UUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 14298 0.66 0.952366
Target:  5'- cUCUCCgGCGUCGCGGc--------- -3'
miRNA:   3'- aAGAGGgCGCGGCGCCauuuuguuuu -5'
6484 5' -52.6 NC_001847.1 + 14318 0.74 0.588534
Target:  5'- -gCUCCCGCuGCuCGCGGUGGGGCc--- -3'
miRNA:   3'- aaGAGGGCG-CG-GCGCCAUUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 14762 0.71 0.778133
Target:  5'- gUCgCCCGCGgCGUGGUAGcGCAGc- -3'
miRNA:   3'- aAGaGGGCGCgGCGCCAUUuUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 15063 0.7 0.797427
Target:  5'- aUCUCCCGCcCCGCGcGgcucGGCAGGAg -3'
miRNA:   3'- aAGAGGGCGcGGCGC-Cauu-UUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 16311 0.69 0.842586
Target:  5'- gUCaCCCGCGgCGCGGguguAGGCAAGc -3'
miRNA:   3'- aAGaGGGCGCgGCGCCau--UUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 16501 0.69 0.842586
Target:  5'- -cCUCCCGCGC-GCGGccugAGGugGAGAg -3'
miRNA:   3'- aaGAGGGCGCGgCGCCa---UUUugUUUU- -5'
6484 5' -52.6 NC_001847.1 + 17625 0.7 0.797427
Target:  5'- -cCUCgUCGuCGCCGCGcGUGGAGCGGAAc -3'
miRNA:   3'- aaGAG-GGC-GCGGCGC-CAUUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 19853 0.67 0.922146
Target:  5'- -cCUCCgGCGCCGCuGUGGAcACGc-- -3'
miRNA:   3'- aaGAGGgCGCGGCGcCAUUU-UGUuuu -5'
6484 5' -52.6 NC_001847.1 + 20083 0.66 0.956493
Target:  5'- -gCUCCCGCGgCGCGGcccGGCc--- -3'
miRNA:   3'- aaGAGGGCGCgGCGCCauuUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 20620 0.67 0.919793
Target:  5'- -gUUCCCGCGCCGCGccgaccgcuGCAGu- -3'
miRNA:   3'- aaGAGGGCGCGGCGCcauuu----UGUUuu -5'
6484 5' -52.6 NC_001847.1 + 21469 0.78 0.380985
Target:  5'- -cCUCCCGCcCCGCGGgcGAAUAAAAc -3'
miRNA:   3'- aaGAGGGCGcGGCGCCauUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 21749 0.66 0.956493
Target:  5'- ---gCCCGCGCgCGCGGggGGGCc--- -3'
miRNA:   3'- aagaGGGCGCG-GCGCCauUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 24235 0.67 0.916184
Target:  5'- aUCUCCacguucagccgcCGCGCgGCGGgcgAGAGCAu-- -3'
miRNA:   3'- aAGAGG------------GCGCGgCGCCa--UUUUGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.