miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 5' -52.6 NC_001847.1 + 115733 0.66 0.949768
Target:  5'- -gCUCCCGCuuugccugcugcgucGCCGCGGagccGACGGGGa -3'
miRNA:   3'- aaGAGGGCG---------------CGGCGCCauu-UUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 113854 0.66 0.947984
Target:  5'- gUC-CCCGUggauGCCGCGGUccgcuACAAAGa -3'
miRNA:   3'- aAGaGGGCG----CGGCGCCAuuu--UGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 35459 0.66 0.947984
Target:  5'- ---gCCCGCGCCGCGcgcc-GCAAAGc -3'
miRNA:   3'- aagaGGGCGCGGCGCcauuuUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 121749 0.66 0.947984
Target:  5'- uUUCUCCCGgGcCCGCGGcgcgcccGGACGu-- -3'
miRNA:   3'- -AAGAGGGCgC-GGCGCCau-----UUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 116438 0.66 0.943344
Target:  5'- -gCUCCCcgcgGCGCUGgCGGUGAcGCGGGc -3'
miRNA:   3'- aaGAGGG----CGCGGC-GCCAUUuUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 74121 0.66 0.943344
Target:  5'- -gUUCCCG-GCCGUGGUGcuGCGc-- -3'
miRNA:   3'- aaGAGGGCgCGGCGCCAUuuUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 116271 0.66 0.943344
Target:  5'- -aCUCUgGCGCCGCucGGcGAGGCAGc- -3'
miRNA:   3'- aaGAGGgCGCGGCG--CCaUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 86726 0.67 0.938441
Target:  5'- -aCUCCaCGCGgcCCGCGG-AGGGCGAu- -3'
miRNA:   3'- aaGAGG-GCGC--GGCGCCaUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 74508 0.67 0.933275
Target:  5'- ---gCCUGCGCCGCGcgcuGGACGAGAc -3'
miRNA:   3'- aagaGGGCGCGGCGCcau-UUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 103332 0.67 0.930048
Target:  5'- cUCUgccCCCGCGCCGCccaccgccacggccGUAAGGCAGGc -3'
miRNA:   3'- aAGA---GGGCGCGGCGc-------------CAUUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 90255 0.67 0.927844
Target:  5'- --gUCCCGCaGCaCGUGGU-AGGCGAAAa -3'
miRNA:   3'- aagAGGGCG-CG-GCGCCAuUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 56091 0.67 0.927844
Target:  5'- -gCUCCgGCGCCGCGuu-AAGCGc-- -3'
miRNA:   3'- aaGAGGgCGCGGCGCcauUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 77095 0.67 0.922146
Target:  5'- aUCggcggCCCGCG-CGCGGUAGcGGCGGGg -3'
miRNA:   3'- aAGa----GGGCGCgGCGCCAUU-UUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 19853 0.67 0.922146
Target:  5'- -cCUCCgGCGCCGCuGUGGAcACGc-- -3'
miRNA:   3'- aaGAGGgCGCGGCGcCAUUU-UGUuuu -5'
6484 5' -52.6 NC_001847.1 + 8971 0.67 0.922146
Target:  5'- cUCaUCUCGgGCCGgGGgcGGGCAGAc -3'
miRNA:   3'- aAG-AGGGCgCGGCgCCauUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 116235 0.67 0.921562
Target:  5'- -gCUCCCGCGCaggagcaCGUGGUGcu-CAAGAu -3'
miRNA:   3'- aaGAGGGCGCG-------GCGCCAUuuuGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 20620 0.67 0.919793
Target:  5'- -gUUCCCGCGCCGCGccgaccgcuGCAGu- -3'
miRNA:   3'- aaGAGGGCGCGGCGCcauuu----UGUUuu -5'
6484 5' -52.6 NC_001847.1 + 68153 0.67 0.916184
Target:  5'- cUUCUCCgGCGCCGCGcc---GCAGc- -3'
miRNA:   3'- -AAGAGGgCGCGGCGCcauuuUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 24235 0.67 0.916184
Target:  5'- aUCUCCacguucagccgcCGCGCgGCGGgcgAGAGCAu-- -3'
miRNA:   3'- aAGAGG------------GCGCGgCGCCa--UUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 78726 0.68 0.909957
Target:  5'- gUCUUCCGCGaCGCGGUGGc------ -3'
miRNA:   3'- aAGAGGGCGCgGCGCCAUUuuguuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.