miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 3' -59.7 NC_001847.1 + 223 0.67 0.626291
Target:  5'- cGG-GGGCCCgagCCCGGGCcucGCGCCccGAc -3'
miRNA:   3'- uCCaUUCGGGa--GGGUCCG---CGUGGa-CU- -5'
6485 3' -59.7 NC_001847.1 + 3412 0.66 0.716963
Target:  5'- cGGGaGAGCag-CCCGGGgGCGCCa-- -3'
miRNA:   3'- -UCCaUUCGggaGGGUCCgCGUGGacu -5'
6485 3' -59.7 NC_001847.1 + 5678 0.69 0.511459
Target:  5'- aAGGUGGGCCggccggggccgCCCagacccggcaguucAGGUGCGCCUGGg -3'
miRNA:   3'- -UCCAUUCGGga---------GGG--------------UCCGCGUGGACU- -5'
6485 3' -59.7 NC_001847.1 + 6319 0.69 0.535858
Target:  5'- uGGUuGGCCCUUUuuGuGCGCGCCUGc -3'
miRNA:   3'- uCCAuUCGGGAGGguC-CGCGUGGACu -5'
6485 3' -59.7 NC_001847.1 + 7926 0.72 0.364953
Target:  5'- aAGG-AAGaCCCUCCCGcGCGCGCCg-- -3'
miRNA:   3'- -UCCaUUC-GGGAGGGUcCGCGUGGacu -5'
6485 3' -59.7 NC_001847.1 + 9690 0.67 0.646618
Target:  5'- cGGGgcaagcccGCCCUCCCcGGaCGCGCCc-- -3'
miRNA:   3'- -UCCauu-----CGGGAGGGuCC-GCGUGGacu -5'
6485 3' -59.7 NC_001847.1 + 9748 0.68 0.56565
Target:  5'- cGGGcGGGCCCUgCCCcGGgGCGCCc-- -3'
miRNA:   3'- -UCCaUUCGGGA-GGGuCCgCGUGGacu -5'
6485 3' -59.7 NC_001847.1 + 10219 0.7 0.478111
Target:  5'- cAGGgcGcGCCCgcugucgcCCCcGGCGCGCCUGc -3'
miRNA:   3'- -UCCauU-CGGGa-------GGGuCCGCGUGGACu -5'
6485 3' -59.7 NC_001847.1 + 15124 0.66 0.716963
Target:  5'- aGGGccUAGGCCgCUcaCCCGGGCaGCGCgCUGu -3'
miRNA:   3'- -UCC--AUUCGG-GA--GGGUCCG-CGUG-GACu -5'
6485 3' -59.7 NC_001847.1 + 19854 0.67 0.636456
Target:  5'- ----uGGCCCgcgCCCGGGgGCGCCg-- -3'
miRNA:   3'- uccauUCGGGa--GGGUCCgCGUGGacu -5'
6485 3' -59.7 NC_001847.1 + 21635 0.66 0.677001
Target:  5'- cGGcgcGGGCCgCgCCCGGGCGCgACCgGAg -3'
miRNA:   3'- uCCa--UUCGG-GaGGGUCCGCG-UGGaCU- -5'
6485 3' -59.7 NC_001847.1 + 23787 0.68 0.605983
Target:  5'- cGGU-AGCCCUCUCGGGacccCACgUGAg -3'
miRNA:   3'- uCCAuUCGGGAGGGUCCgc--GUGgACU- -5'
6485 3' -59.7 NC_001847.1 + 26320 0.68 0.595853
Target:  5'- uGGGgcAGCgUcCCCAGGCGCGCg--- -3'
miRNA:   3'- -UCCauUCGgGaGGGUCCGCGUGgacu -5'
6485 3' -59.7 NC_001847.1 + 26348 0.68 0.56565
Target:  5'- cGGcGUAcaugcAGCUCUCCCGGGUGgGCCg-- -3'
miRNA:   3'- -UC-CAU-----UCGGGAGGGUCCGCgUGGacu -5'
6485 3' -59.7 NC_001847.1 + 26615 1.08 0.001099
Target:  5'- cAGGUAAGCCCUCCCAGGCGCACCUGAa -3'
miRNA:   3'- -UCCAUUCGGGAGGGUCCGCGUGGACU- -5'
6485 3' -59.7 NC_001847.1 + 27060 0.7 0.478111
Target:  5'- gAGGcccgcAGCCC-CCCGGGCGgCACCg-- -3'
miRNA:   3'- -UCCau---UCGGGaGGGUCCGC-GUGGacu -5'
6485 3' -59.7 NC_001847.1 + 32246 0.67 0.626291
Target:  5'- aGGGgcgGAGCCCagagcgggCCCGGGCcCGCCg-- -3'
miRNA:   3'- -UCCa--UUCGGGa-------GGGUCCGcGUGGacu -5'
6485 3' -59.7 NC_001847.1 + 35284 0.66 0.69709
Target:  5'- gAGGUAacguacugcgcAGCCCcgCCgAgcGGCGCGCgCUGGa -3'
miRNA:   3'- -UCCAU-----------UCGGGa-GGgU--CCGCGUG-GACU- -5'
6485 3' -59.7 NC_001847.1 + 36261 0.68 0.58575
Target:  5'- cGGccUGGGCCg-CCCAGGCGCACg--- -3'
miRNA:   3'- uCC--AUUCGGgaGGGUCCGCGUGgacu -5'
6485 3' -59.7 NC_001847.1 + 39608 0.67 0.646618
Target:  5'- cGGcgcGGCCCcagcCCCAGGgGCaaGCCUGGc -3'
miRNA:   3'- uCCau-UCGGGa---GGGUCCgCG--UGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.