Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6485 | 3' | -59.7 | NC_001847.1 | + | 132954 | 0.69 | 0.503748 |
Target: 5'- gAGGUGcGCCCgcacgccgCCCAGGCgGCgcgggcgcugcgagACCUGGu -3' miRNA: 3'- -UCCAUuCGGGa-------GGGUCCG-CG--------------UGGACU- -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 91887 | 0.69 | 0.497042 |
Target: 5'- cAGGU--GCCC-CCCGGGCGCcgcGCCg-- -3' miRNA: 3'- -UCCAuuCGGGaGGGUCCGCG---UGGacu -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 94160 | 0.71 | 0.389392 |
Target: 5'- cAGGUGAGCgCggCCC-GGCGCaACCUGc -3' miRNA: 3'- -UCCAUUCGgGa-GGGuCCGCG-UGGACu -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 92918 | 0.72 | 0.341595 |
Target: 5'- aAGGUGaacuauuuGGCCUUUUC-GGCGCGCCUGGc -3' miRNA: 3'- -UCCAU--------UCGGGAGGGuCCGCGUGGACU- -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 101157 | 0.69 | 0.497042 |
Target: 5'- aAGGcUGGGCCCagCCCGGccaGCGCGCCcGGc -3' miRNA: 3'- -UCC-AUUCGGGa-GGGUC---CGCGUGGaCU- -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 67072 | 0.7 | 0.459541 |
Target: 5'- cGGcGUucGCCCcgCCgCAGGCGCGCCg-- -3' miRNA: 3'- -UC-CAuuCGGGa-GG-GUCCGCGUGGacu -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 58639 | 0.71 | 0.389392 |
Target: 5'- -cGUAGGCCgcgaacacgggCUCCCAGGCGCugCa-- -3' miRNA: 3'- ucCAUUCGG-----------GAGGGUCCGCGugGacu -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 71125 | 0.69 | 0.506634 |
Target: 5'- cGGGcAAGCCCgucccgccgCCCGGGUagagcucgcgGCACUUGAg -3' miRNA: 3'- -UCCaUUCGGGa--------GGGUCCG----------CGUGGACU- -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 118455 | 0.71 | 0.406269 |
Target: 5'- uGGUGGcggccucguGCCUgcggcgcaaggCCCGGGCGCGCCUGu -3' miRNA: 3'- uCCAUU---------CGGGa----------GGGUCCGCGUGGACu -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 10219 | 0.7 | 0.478111 |
Target: 5'- cAGGgcGcGCCCgcugucgcCCCcGGCGCGCCUGc -3' miRNA: 3'- -UCCauU-CGGGa-------GGGuCCGCGUGGACu -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 60024 | 0.7 | 0.487533 |
Target: 5'- cGGGgcccGGGCCUUCUCGGGCaaGCGCCgGGg -3' miRNA: 3'- -UCCa---UUCGGGAGGGUCCG--CGUGGaCU- -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 26320 | 0.68 | 0.595853 |
Target: 5'- uGGGgcAGCgUcCCCAGGCGCGCg--- -3' miRNA: 3'- -UCCauUCGgGaGGGUCCGCGUGgacu -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 110739 | 0.72 | 0.364953 |
Target: 5'- aAGG-AAGaCCCUCCCGcGCGCGCCg-- -3' miRNA: 3'- -UCCaUUC-GGGAGGGUcCGCGUGGacu -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 124448 | 0.66 | 0.677001 |
Target: 5'- cGGcgcGGGCCgCgCCCGGGCGCgACCgGAg -3' miRNA: 3'- uCCa--UUCGG-GaGGGUCCGCG-UGGaCU- -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 35284 | 0.66 | 0.69709 |
Target: 5'- gAGGUAacguacugcgcAGCCCcgCCgAgcGGCGCGCgCUGGa -3' miRNA: 3'- -UCCAU-----------UCGGGa-GGgU--CCGCGUG-GACU- -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 108491 | 0.69 | 0.511459 |
Target: 5'- aAGGUGGGCCggccggggccgCCCagacccggcaguucAGGUGCGCCUGGg -3' miRNA: 3'- -UCCAUUCGGga---------GGG--------------UCCGCGUGGACU- -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 3412 | 0.66 | 0.716963 |
Target: 5'- cGGGaGAGCag-CCCGGGgGCGCCa-- -3' miRNA: 3'- -UCCaUUCGggaGGGUCCgCGUGGacu -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 126600 | 0.68 | 0.605983 |
Target: 5'- cGGU-AGCCCUCUCGGGacccCACgUGAg -3' miRNA: 3'- uCCAuUCGGGAGGGUCCgc--GUGgACU- -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 83548 | 0.68 | 0.604969 |
Target: 5'- gGGGUGGagcacuGCCCUCCCGacGGCugccccgGCGCCgcgGAa -3' miRNA: 3'- -UCCAUU------CGGGAGGGU--CCG-------CGUGGa--CU- -5' |
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6485 | 3' | -59.7 | NC_001847.1 | + | 36261 | 0.68 | 0.58575 |
Target: 5'- cGGccUGGGCCg-CCCAGGCGCACg--- -3' miRNA: 3'- uCC--AUUCGGgaGGGUCCGCGUGgacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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