miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 82973 0.66 0.344694
Target:  5'- aUCUGuGGUGGCUgcuCCGGCgGaGCCUgGCCa -3'
miRNA:   3'- cAGAC-CCGCCGG---GGCCGgC-CGGG-UGG- -5'
6485 5' -68.2 NC_001847.1 + 133213 0.66 0.35191
Target:  5'- ----cGGCGGCCCgagUGGCCG-CCgCGCCg -3'
miRNA:   3'- cagacCCGCCGGG---GCCGGCcGG-GUGG- -5'
6485 5' -68.2 NC_001847.1 + 78314 0.66 0.35191
Target:  5'- -gCUGGGCcGCCCCcuccCCGcGCCC-CCa -3'
miRNA:   3'- caGACCCGcCGGGGcc--GGC-CGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 15767 0.66 0.344694
Target:  5'- ---cGGGCGGCCCgCuuucGCCGGCggcaagCGCCg -3'
miRNA:   3'- cagaCCCGCCGGG-Gc---CGGCCGg-----GUGG- -5'
6485 5' -68.2 NC_001847.1 + 105184 0.66 0.35191
Target:  5'- cGUCggcgGcGGCGGCUuuucgCCGGCgccuCGGCCCAg- -3'
miRNA:   3'- -CAGa---C-CCGCCGG-----GGCCG----GCCGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 132274 0.66 0.344694
Target:  5'- ---cGcGGCGGCCCgCGcGUCGGCCUgggcGCUg -3'
miRNA:   3'- cagaC-CCGCCGGG-GC-CGGCCGGG----UGG- -5'
6485 5' -68.2 NC_001847.1 + 87661 0.66 0.358495
Target:  5'- uGUUUGGGCugcgccgcauGGCCCgGGCgcuggggcugcugCGGCgCCGCg -3'
miRNA:   3'- -CAGACCCG----------CCGGGgCCG-------------GCCG-GGUGg -5'
6485 5' -68.2 NC_001847.1 + 133885 0.66 0.344694
Target:  5'- -gCUGGG-GGCUCggcgcgccgcugCGGCCGGUgUACCu -3'
miRNA:   3'- caGACCCgCCGGG------------GCCGGCCGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 121873 0.66 0.35191
Target:  5'- -----cGUGGCCCUGGaCgCGGCCUGCCu -3'
miRNA:   3'- cagaccCGCCGGGGCC-G-GCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 67832 0.66 0.35191
Target:  5'- cGUCcGcGCGGCCCaaaaagGGCCGucGCCgCGCCa -3'
miRNA:   3'- -CAGaCcCGCCGGGg-----CCGGC--CGG-GUGG- -5'
6485 5' -68.2 NC_001847.1 + 64446 0.66 0.359232
Target:  5'- ---cGGGC-GCCCCcGCCGccGCCCGCg -3'
miRNA:   3'- cagaCCCGcCGGGGcCGGC--CGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 12295 0.66 0.347567
Target:  5'- ---aGGGgGuGCCCCGcaagacuacuugaCGGCCCACCu -3'
miRNA:   3'- cagaCCCgC-CGGGGCcg-----------GCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 129804 0.66 0.35191
Target:  5'- ---cGGcCGGCUagccagcuccgaCCGGCCGGCCUucuGCCa -3'
miRNA:   3'- cagaCCcGCCGG------------GGCCGGCCGGG---UGG- -5'
6485 5' -68.2 NC_001847.1 + 12936 0.66 0.35191
Target:  5'- ---aGGGCacccGGCCCCGGCuaguguggCGGCgCGCg -3'
miRNA:   3'- cagaCCCG----CCGGGGCCG--------GCCGgGUGg -5'
6485 5' -68.2 NC_001847.1 + 93793 0.66 0.359232
Target:  5'- -gCUGGuuccgcGCGGCCgCgCGGCCGaGUCC-CCg -3'
miRNA:   3'- caGACC------CGCCGG-G-GCCGGC-CGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 21877 0.66 0.337585
Target:  5'- -gCUGcGGCGcgcuGCCgaGGCCGaGCCCGCg -3'
miRNA:   3'- caGAC-CCGC----CGGggCCGGC-CGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 76111 0.66 0.344694
Target:  5'- cGUCUGGaCGGCCUCGGggcggauaaagUUGGCCUcguCCa -3'
miRNA:   3'- -CAGACCcGCCGGGGCC-----------GGCCGGGu--GG- -5'
6485 5' -68.2 NC_001847.1 + 96867 0.66 0.344694
Target:  5'- --gUGGGCGGCggUCCGcGCUGGggagggaCCGCCg -3'
miRNA:   3'- cagACCCGCCG--GGGC-CGGCCg------GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 93605 0.66 0.344694
Target:  5'- cUCUGccaucgcccaGGU-GCUCCGGCCGGCgCgGCCg -3'
miRNA:   3'- cAGAC----------CCGcCGGGGCCGGCCG-GgUGG- -5'
6485 5' -68.2 NC_001847.1 + 53039 0.66 0.347567
Target:  5'- ---cGGGCcucggcuccgagccuGGCCCCGcGCuUGGCCCagacGCCg -3'
miRNA:   3'- cagaCCCG---------------CCGGGGC-CG-GCCGGG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.