miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 106 0.7 0.194073
Target:  5'- -cCUGGGUccggcgccccGcGCCCCGGCCccGCCCGCg -3'
miRNA:   3'- caGACCCG----------C-CGGGGCCGGc-CGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 141 0.7 0.20325
Target:  5'- ---cGGGCcucgGGCCCCGGCCGGgggGCCg -3'
miRNA:   3'- cagaCCCG----CCGGGGCCGGCCgggUGG- -5'
6485 5' -68.2 NC_001847.1 + 354 0.67 0.290833
Target:  5'- ---cGGGCuucgcGCCCCGG--GGCCCGCCc -3'
miRNA:   3'- cagaCCCGc----CGGGGCCggCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 482 0.72 0.142865
Target:  5'- cGUCaUGGGUGcccgcGCCuCCGcgccugcuGCCGGCCCGCCc -3'
miRNA:   3'- -CAG-ACCCGC-----CGG-GGC--------CGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 746 0.72 0.142865
Target:  5'- -----cGCgGGCCCCccuagggcgaGGCCGGCCCGCCg -3'
miRNA:   3'- cagaccCG-CCGGGG----------CCGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 897 0.74 0.096901
Target:  5'- ---gGGGCcgccgcGGCCgCCGGCCGccGCCCGCCg -3'
miRNA:   3'- cagaCCCG------CCGG-GGCCGGC--CGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 914 0.69 0.222737
Target:  5'- ---cGaGGCGGaCCCGGCCuuCCCACCg -3'
miRNA:   3'- cagaC-CCGCCgGGGCCGGccGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 963 0.66 0.343978
Target:  5'- -aCUGcGcCGGCaCCCgGGCCGGCggggcuuCCGCCg -3'
miRNA:   3'- caGACcC-GCCG-GGG-CCGGCCG-------GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 1094 0.69 0.217721
Target:  5'- ---cGGGCgccgcGGCCgCGGgCGGCgCCGCCg -3'
miRNA:   3'- cagaCCCG-----CCGGgGCCgGCCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 2240 0.67 0.323005
Target:  5'- -gCUGGGCGcgggcgugugguaGuCCCCGGgCGGCacgcggcggaagCCGCCg -3'
miRNA:   3'- caGACCCGC-------------C-GGGGCCgGCCG------------GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 2340 0.72 0.136178
Target:  5'- ---aGcGGCGGCuCCCGccgcGCCGGCCCgGCCg -3'
miRNA:   3'- cagaC-CCGCCG-GGGC----CGGCCGGG-UGG- -5'
6485 5' -68.2 NC_001847.1 + 2371 0.66 0.35191
Target:  5'- cGUCggcgGcGGCGGCUuuucgCCGGCgccuCGGCCCAg- -3'
miRNA:   3'- -CAGa---C-CCGCCGG-----GGCCG----GCCGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 2583 0.69 0.212316
Target:  5'- -cCUGcGCGGCCgCCgcGGCCGcacgcgaGCCCGCCg -3'
miRNA:   3'- caGACcCGCCGG-GG--CCGGC-------CGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 2759 0.67 0.310224
Target:  5'- ---cGcGGCGGCgCCGgcGCCGGCgcccCCGCCg -3'
miRNA:   3'- cagaC-CCGCCGgGGC--CGGCCG----GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 3084 0.71 0.168689
Target:  5'- cGUCcGGcGCgcaGGCCgCGGCCggcaggccgcGGCCCGCCg -3'
miRNA:   3'- -CAGaCC-CG---CCGGgGCCGG----------CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 3147 0.66 0.365912
Target:  5'- ----cGGCGGCgCCGGCggcgcggCGGgCCGCCu -3'
miRNA:   3'- cagacCCGCCGgGGCCG-------GCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 3537 0.67 0.330583
Target:  5'- -----uGUGGCCCCGGCa-GCCCugCa -3'
miRNA:   3'- cagaccCGCCGGGGCCGgcCGGGugG- -5'
6485 5' -68.2 NC_001847.1 + 3992 0.67 0.323689
Target:  5'- ---cGGGCgcgcGGCCCCGcggggcGCCGggcccggcGCCCGCCu -3'
miRNA:   3'- cagaCCCG----CCGGGGC------CGGC--------CGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 4052 0.68 0.254926
Target:  5'- uUCUGGuccCGGCCCCaGucCCGGCCUcaGCCu -3'
miRNA:   3'- cAGACCc--GCCGGGGcC--GGCCGGG--UGG- -5'
6485 5' -68.2 NC_001847.1 + 4217 0.67 0.316902
Target:  5'- cGUCgccGGCcucGGUCCUGGCCccgagGGCaCCGCCg -3'
miRNA:   3'- -CAGac-CCG---CCGGGGCCGG-----CCG-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.