miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 130784 0.66 0.36666
Target:  5'- gGUCgcggugGaGGCGGCCgCGGCCGGggcggaggCgGCCg -3'
miRNA:   3'- -CAGa-----C-CCGCCGGgGCCGGCCg-------GgUGG- -5'
6485 5' -68.2 NC_001847.1 + 21375 0.66 0.36666
Target:  5'- ---cGGGCcGCCUCGGgCGGCUCGUCa -3'
miRNA:   3'- cagaCCCGcCGGGGCCgGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 59318 0.66 0.36666
Target:  5'- ---gGGcGCGGCgCCGGCgGcGCCgUACCa -3'
miRNA:   3'- cagaCC-CGCCGgGGCCGgC-CGG-GUGG- -5'
6485 5' -68.2 NC_001847.1 + 61940 0.66 0.36666
Target:  5'- cGUCaGcGGCGGCgcggCCCGcGCgGGCCgACUc -3'
miRNA:   3'- -CAGaC-CCGCCG----GGGC-CGgCCGGgUGG- -5'
6485 5' -68.2 NC_001847.1 + 86611 0.66 0.36666
Target:  5'- cUCcGGGCGcGCCUCGaGgCGGgCCACa -3'
miRNA:   3'- cAGaCCCGC-CGGGGC-CgGCCgGGUGg -5'
6485 5' -68.2 NC_001847.1 + 100622 0.66 0.36666
Target:  5'- ---cGGGCGGCgCaucGCCGGCgCCGuCCg -3'
miRNA:   3'- cagaCCCGCCGgGgc-CGGCCG-GGU-GG- -5'
6485 5' -68.2 NC_001847.1 + 27971 0.66 0.36666
Target:  5'- gGUCgcggugGaGGCGGCCgCGGCCGGggcggaggCgGCCg -3'
miRNA:   3'- -CAGa-----C-CCGCCGGgGCCGGCCg-------GgUGG- -5'
6485 5' -68.2 NC_001847.1 + 58299 0.66 0.36666
Target:  5'- -aCgGcGGCGGCCggcaGGCCGGCauggCGCCg -3'
miRNA:   3'- caGaC-CCGCCGGgg--CCGGCCGg---GUGG- -5'
6485 5' -68.2 NC_001847.1 + 84870 0.66 0.36666
Target:  5'- -gCUaGGCGGCCCaCGuaCGcGCCCAgCg -3'
miRNA:   3'- caGAcCCGCCGGG-GCcgGC-CGGGUgG- -5'
6485 5' -68.2 NC_001847.1 + 24459 0.66 0.36666
Target:  5'- gGUCU-GGCGGCCCaaa-CGGCCCGa- -3'
miRNA:   3'- -CAGAcCCGCCGGGgccgGCCGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 47769 0.66 0.36666
Target:  5'- uGUCcgcgaaGGCGGCCacggccgggugcUCGGCCaGGCCCucgGCCg -3'
miRNA:   3'- -CAGac----CCGCCGG------------GGCCGG-CCGGG---UGG- -5'
6485 5' -68.2 NC_001847.1 + 89059 0.66 0.36666
Target:  5'- ---cGGGCcgGGCgCCUGGCgGacguguuuGCCCACCg -3'
miRNA:   3'- cagaCCCG--CCG-GGGCCGgC--------CGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 53856 0.66 0.36666
Target:  5'- -gCU-GGCGGCgCUGGCgGcGCCgACCg -3'
miRNA:   3'- caGAcCCGCCGgGGCCGgC-CGGgUGG- -5'
6485 5' -68.2 NC_001847.1 + 127272 0.66 0.36666
Target:  5'- gGUCU-GGCGGCCCaaa-CGGCCCGa- -3'
miRNA:   3'- -CAGAcCCGCCGGGgccgGCCGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 3147 0.66 0.365912
Target:  5'- ----cGGCGGCgCCGGCggcgcggCGGgCCGCCu -3'
miRNA:   3'- cagacCCGCCGgGGCCG-------GCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 131720 0.66 0.365912
Target:  5'- -cCUGGGCugcgccuGGCCCCccgGGCUGcucuCCCGCUg -3'
miRNA:   3'- caGACCCG-------CCGGGG---CCGGCc---GGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 29442 0.66 0.365912
Target:  5'- -gCUgGGGCGuggcgccGCCCgCGGCCGaaGCgCCGCCc -3'
miRNA:   3'- caGA-CCCGC-------CGGG-GCCGGC--CG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 105960 0.66 0.365912
Target:  5'- ----cGGCGGCgCCGGCggcgcggCGGgCCGCCu -3'
miRNA:   3'- cagacCCGCCGgGGCCG-------GCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 58685 0.66 0.36442
Target:  5'- ---cGGGCGGCa--GGCUGGCcauggcgcuggcauCCACCg -3'
miRNA:   3'- cagaCCCGCCGgggCCGGCCG--------------GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 96997 0.66 0.36442
Target:  5'- cUCgGGGCGGCgcgccgcgcgaagaCUCGGugcCCGGCgCACCc -3'
miRNA:   3'- cAGaCCCGCCG--------------GGGCC---GGCCGgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.