miRNA display CGI


Results 81 - 100 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 34407 0.67 0.886118
Target:  5'- -gGCAGAcgcGGCGCuGGGgGcGGCgGAAGa -3'
miRNA:   3'- uaCGUUU---UCGCGuUCCgC-CCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 70369 0.67 0.913051
Target:  5'- -aGCGAGggGGCGcCGGGGCGcgagcucgcgcuGGCCAAGa -3'
miRNA:   3'- uaCGUUU--UCGC-GUUCCGC------------CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 54548 0.67 0.913051
Target:  5'- -cGCAGAcGGCG-GGGGCGGcGCgGAGGa -3'
miRNA:   3'- uaCGUUU-UCGCgUUCCGCC-CGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 45497 0.67 0.906704
Target:  5'- -aGCAAAcGCcCGGGGCGGGCg---- -3'
miRNA:   3'- uaCGUUUuCGcGUUCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 110129 0.67 0.906704
Target:  5'- uGUGUA--AGUGCAcagagAGGCGGGgCGAAa -3'
miRNA:   3'- -UACGUuuUCGCGU-----UCCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 34076 0.67 0.906704
Target:  5'- -gGCAcgcGGAGCGCGuGGCGGccGCCGu-- -3'
miRNA:   3'- uaCGU---UUUCGCGUuCCGCC--CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 17492 0.67 0.913051
Target:  5'- -gGCAAGuuGCGgGGgucGGCGGGCgAAGGg -3'
miRNA:   3'- uaCGUUUu-CGCgUU---CCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 43128 0.67 0.913051
Target:  5'- -cGCAGAcGGCGCGGGcccGCGGGCg---- -3'
miRNA:   3'- uaCGUUU-UCGCGUUC---CGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 29201 0.67 0.913051
Target:  5'- uUGCuGGGGCuGCccgacGGCGGGCUGGAGc -3'
miRNA:   3'- uACGuUUUCG-CGuu---CCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 51109 0.67 0.913051
Target:  5'- --uCAAGAuGCGCGAGGCGcuguacgaGGCCAAc- -3'
miRNA:   3'- uacGUUUU-CGCGUUCCGC--------CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 81569 0.67 0.900098
Target:  5'- -cGCAGcuGCGCGGGGCcggcGGCUAcGGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGc---CCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 91456 0.67 0.902771
Target:  5'- -cGCGGGAGCGUccacacgaggucgucGAgcaccugcGGCGGGCCAc-- -3'
miRNA:   3'- uaCGUUUUCGCG---------------UU--------CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 130614 0.67 0.886118
Target:  5'- -cGCGGGGGC-CAccgaGGGCGccgaGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGcGU----UCCGC----CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 11192 0.67 0.886118
Target:  5'- -cGCugguccGCGCGGGGCuGGUCGAGGu -3'
miRNA:   3'- uaCGuuuu--CGCGUUCCGcCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 20259 0.67 0.886118
Target:  5'- -cGCGAGAGCgagacgGCGAGGuCGGcGCCGc-- -3'
miRNA:   3'- uaCGUUUUCG------CGUUCC-GCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 29715 0.67 0.886118
Target:  5'- -cGCGAGacugcGGCGCGGGaGCGGugGCCAAc- -3'
miRNA:   3'- uaCGUUU-----UCGCGUUC-CGCC--CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 33969 0.67 0.886118
Target:  5'- -cGCGcuGGCGCcGGGCGcgcuGGCCGGGc -3'
miRNA:   3'- uaCGUuuUCGCGuUCCGC----CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 10859 0.67 0.900098
Target:  5'- -gGCcGAGGCGC--GGCGGGCgCGGGc -3'
miRNA:   3'- uaCGuUUUCGCGuuCCGCCCG-GUUUc -5'
6486 3' -53.4 NC_001847.1 + 26751 0.67 0.900098
Target:  5'- -gGCcguAGAGCGCGGGuGCGcGGCCu--- -3'
miRNA:   3'- uaCGu--UUUCGCGUUC-CGC-CCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 49723 0.67 0.893234
Target:  5'- cGUGCAAGugGGCGCcggcGAGGCGGuGCgCGu-- -3'
miRNA:   3'- -UACGUUU--UCGCG----UUCCGCC-CG-GUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.