miRNA display CGI


Results 121 - 140 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 29201 0.67 0.913051
Target:  5'- uUGCuGGGGCuGCccgacGGCGGGCUGGAGc -3'
miRNA:   3'- uACGuUUUCG-CGuu---CCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 55144 0.67 0.913051
Target:  5'- -cGCGcgGGCGCGGGGCGucaccGCCGc-- -3'
miRNA:   3'- uaCGUuuUCGCGUUCCGCc----CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 119729 0.67 0.913051
Target:  5'- --aCGGAGGCGCcgAGGGCGaGCCGAAa -3'
miRNA:   3'- uacGUUUUCGCG--UUCCGCcCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 134456 0.67 0.913051
Target:  5'- uUGCGGcAGgGCAagauggcauAGGCGcGGCCAAc- -3'
miRNA:   3'- uACGUUuUCgCGU---------UCCGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 93820 0.67 0.912428
Target:  5'- -aGCGAGAGCuCGAaccggccGGCGGcGCCGGAa -3'
miRNA:   3'- uaCGUUUUCGcGUU-------CCGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 14156 0.67 0.900098
Target:  5'- -cGCAGcGGCGgcCGGGGCGGccgcGCUAAAGg -3'
miRNA:   3'- uaCGUUuUCGC--GUUCCGCC----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 20899 0.67 0.900098
Target:  5'- -gGCAGcGAGCGCGucGCGGGCgAGc- -3'
miRNA:   3'- uaCGUU-UUCGCGUucCGCCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 82382 0.67 0.900098
Target:  5'- cAUGuCAAuGGU-CAGGGCGGGCCGc-- -3'
miRNA:   3'- -UAC-GUUuUCGcGUUCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 116402 0.67 0.900098
Target:  5'- -gGCGGcGGCGCucuGGGCcccGGGCCGc-- -3'
miRNA:   3'- uaCGUUuUCGCGu--UCCG---CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 125465 0.67 0.900098
Target:  5'- -gGCGGGucGGCgGCAGcucgcGGCGGGCgCGAGGa -3'
miRNA:   3'- uaCGUUU--UCG-CGUU-----CCGCCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 15386 0.67 0.900098
Target:  5'- -gGCGGucGGCGuCGGGGCugGGGCCGGGu -3'
miRNA:   3'- uaCGUUu-UCGC-GUUCCG--CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 118467 0.67 0.900098
Target:  5'- cGUGCcugcGGCGCAAGGCccGGGCg---- -3'
miRNA:   3'- -UACGuuu-UCGCGUUCCG--CCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 105324 0.67 0.90077
Target:  5'- uUGCGGAccugcgucgucgugGGCGcCGGGGCGcucgcguccacaaacGGCCAGAGc -3'
miRNA:   3'- uACGUUU--------------UCGC-GUUCCGC---------------CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 24341 0.67 0.906704
Target:  5'- gAUGUccAAGUGgAGGGgGGGCCcGAGc -3'
miRNA:   3'- -UACGuuUUCGCgUUCCgCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 7316 0.67 0.906704
Target:  5'- uGUGUA--AGUGCAcagagAGGCGGGgCGAAa -3'
miRNA:   3'- -UACGUuuUCGCGU-----UCCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 18666 0.67 0.906704
Target:  5'- -gGCGGGAGUGCAGGuacGCGaGGCCc--- -3'
miRNA:   3'- uaCGUUUUCGCGUUC---CGC-CCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 42733 0.67 0.906704
Target:  5'- -gGCGGccGCGCGGgcGGCGGGgCGGAc -3'
miRNA:   3'- uaCGUUuuCGCGUU--CCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 125793 0.67 0.906704
Target:  5'- -gGCA--AGCGagucGGCGGGCCGGc- -3'
miRNA:   3'- uaCGUuuUCGCguu-CCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 61777 0.67 0.906704
Target:  5'- --aCGGuGGCGCGgugcGGGUGGGCCGGGu -3'
miRNA:   3'- uacGUUuUCGCGU----UCCGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 45497 0.67 0.906704
Target:  5'- -aGCAAAcGCcCGGGGCGGGCg---- -3'
miRNA:   3'- uaCGUUUuCGcGUUCCGCCCGguuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.