miRNA display CGI


Results 141 - 160 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 25210 0.67 0.886118
Target:  5'- -gGCAAGAcCgGCAAGGUGGGCUg--- -3'
miRNA:   3'- uaCGUUUUcG-CGUUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 26060 0.67 0.886118
Target:  5'- -gGCAAAAGCaaAAGGCGcGCuCGAAGg -3'
miRNA:   3'- uaCGUUUUCGcgUUCCGCcCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 27801 0.67 0.886118
Target:  5'- -cGCGGGGGC-CAccgaGGGCGccgaGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGcGU----UCCGC----CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 33133 0.67 0.886118
Target:  5'- cUGCGGcGGGUGguGGaGUGGGUCGAGGg -3'
miRNA:   3'- uACGUU-UUCGCguUC-CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 38425 0.67 0.886118
Target:  5'- -cGCAGGGGCGgGagcccgagGGGCGGGCa---- -3'
miRNA:   3'- uaCGUUUUCGCgU--------UCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 125793 0.67 0.906704
Target:  5'- -gGCA--AGCGagucGGCGGGCCGGc- -3'
miRNA:   3'- uaCGUuuUCGCguu-CCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 134157 0.67 0.886118
Target:  5'- -gGCAGAAgGUGCGu-GCGGGCCGGc- -3'
miRNA:   3'- uaCGUUUU-CGCGUucCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 107333 0.67 0.886118
Target:  5'- -cGCGu--GCGcCGGGGCGcgaauGGCCAGAGc -3'
miRNA:   3'- uaCGUuuuCGC-GUUCCGC-----CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 30360 0.67 0.886118
Target:  5'- -cGgGGAGGCGCu-GGCGGcGCCGc-- -3'
miRNA:   3'- uaCgUUUUCGCGuuCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 52868 0.67 0.886118
Target:  5'- -aGCAAggcguggccGAGCGCGuacAGGCGauGGCCAGu- -3'
miRNA:   3'- uaCGUU---------UUCGCGU---UCCGC--CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 58902 0.68 0.871145
Target:  5'- -gGCAAAuGCGCcgcGGGCGGGUguugcgcagcagCGAAGg -3'
miRNA:   3'- uaCGUUUuCGCGu--UCCGCCCG------------GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 41637 0.68 0.871145
Target:  5'- -cGCGAGcGGCGCGccGGgGGGCCGcGAGa -3'
miRNA:   3'- uaCGUUU-UCGCGUu-CCgCCCGGU-UUC- -5'
6486 3' -53.4 NC_001847.1 + 133794 0.68 0.871145
Target:  5'- -cGCAAGGacauggccGCGCAGGGCGcGGCgCuGGGg -3'
miRNA:   3'- uaCGUUUU--------CGCGUUCCGC-CCG-GuUUC- -5'
6486 3' -53.4 NC_001847.1 + 6761 0.68 0.870371
Target:  5'- gGUGCGGccGGUGCGAGGCGccagcugcuccguGGCCAc-- -3'
miRNA:   3'- -UACGUUu-UCGCGUUCCGC-------------CCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 131550 0.68 0.871145
Target:  5'- cUGCA-GAGCGCGAagcucGCGGGCCc--- -3'
miRNA:   3'- uACGUuUUCGCGUUc----CGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 67546 0.68 0.866466
Target:  5'- -cGCA--GGCGCGggcGGuucucccagaucggcGCGGGCCAAAGc -3'
miRNA:   3'- uaCGUuuUCGCGU---UC---------------CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 130581 0.68 0.8633
Target:  5'- -cGCgGAGAGCaGCGAGGacgaCGGcGCCGGAGa -3'
miRNA:   3'- uaCG-UUUUCG-CGUUCC----GCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 84454 0.68 0.8633
Target:  5'- cGUGCGcgggggguggGGAGCGgGGGGgGGGgCGGGGg -3'
miRNA:   3'- -UACGU----------UUUCGCgUUCCgCCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 104294 0.68 0.8633
Target:  5'- -gGCAGAGcCGCAGcGGCGGcGCCucGGg -3'
miRNA:   3'- uaCGUUUUcGCGUU-CCGCC-CGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 99690 0.68 0.871145
Target:  5'- uUGCGGc-GCGCGGcGCGGGCCGc-- -3'
miRNA:   3'- uACGUUuuCGCGUUcCGCCCGGUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.