Results 161 - 180 of 371 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 41637 | 0.68 | 0.871145 |
Target: 5'- -cGCGAGcGGCGCGccGGgGGGCCGcGAGa -3' miRNA: 3'- uaCGUUU-UCGCGUu-CCgCCCGGU-UUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 58902 | 0.68 | 0.871145 |
Target: 5'- -gGCAAAuGCGCcgcGGGCGGGUguugcgcagcagCGAAGg -3' miRNA: 3'- uaCGUUUuCGCGu--UCCGCCCG------------GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 131550 | 0.68 | 0.871145 |
Target: 5'- cUGCA-GAGCGCGAagcucGCGGGCCc--- -3' miRNA: 3'- uACGUuUUCGCGUUc----CGCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 19884 | 0.68 | 0.855224 |
Target: 5'- -gGC---GGCGCu-GGCGGGCgCGAGGu -3' miRNA: 3'- uaCGuuuUCGCGuuCCGCCCG-GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 26340 | 0.68 | 0.852757 |
Target: 5'- -cGCGAAggcGGCGUAcaugcagcucucccGGGUGGGCCGc-- -3' miRNA: 3'- uaCGUUU---UCGCGU--------------UCCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 133172 | 0.68 | 0.871145 |
Target: 5'- cUGCuaccuGCGCGGGcGCGGGCUg--- -3' miRNA: 3'- uACGuuuu-CGCGUUC-CGCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 104376 | 0.68 | 0.871145 |
Target: 5'- -cGCAGAcgcgcGGCGCugcaGCGGGCCGcGGu -3' miRNA: 3'- uaCGUUU-----UCGCGuuc-CGCCCGGUuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 116055 | 0.68 | 0.83841 |
Target: 5'- -aGCGAAAGCGgGAGcgaaaGCGgGGCCGAc- -3' miRNA: 3'- uaCGUUUUCGCgUUC-----CGC-CCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 83049 | 0.68 | 0.83841 |
Target: 5'- aGUGCGcuuGGGC-CGcGGCGcGGCCGAAGa -3' miRNA: 3'- -UACGUu--UUCGcGUuCCGC-CCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 58831 | 0.68 | 0.846925 |
Target: 5'- gGUGCGAGGGUcgGCAcuuGGGcCGGGCCc--- -3' miRNA: 3'- -UACGUUUUCG--CGU---UCC-GCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 77253 | 0.68 | 0.846925 |
Target: 5'- -cGCGcgGGCGCu-GGCGGGCg---- -3' miRNA: 3'- uaCGUuuUCGCGuuCCGCCCGguuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 126084 | 0.68 | 0.83841 |
Target: 5'- cUGCAAugGAGCGCugcacGGGgGGGCgGAGc -3' miRNA: 3'- uACGUU--UUCGCGu----UCCgCCCGgUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 82586 | 0.68 | 0.846925 |
Target: 5'- cGUGCGcGAAGCGCucgcGGCGGcGCCu--- -3' miRNA: 3'- -UACGU-UUUCGCGuu--CCGCC-CGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 102872 | 0.68 | 0.846925 |
Target: 5'- -gGCGGAaauuucGGCGC--GGCGGGCCcGGGc -3' miRNA: 3'- uaCGUUU------UCGCGuuCCGCCCGGuUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 62801 | 0.68 | 0.846925 |
Target: 5'- -gGCGAGAucGCGCAcaAGcCGGGCCGAGu -3' miRNA: 3'- uaCGUUUU--CGCGU--UCcGCCCGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 32050 | 0.68 | 0.846925 |
Target: 5'- -cGCGAAagguccggGGCGCGGagacGGCggGGGCCGGGGa -3' miRNA: 3'- uaCGUUU--------UCGCGUU----CCG--CCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 92732 | 0.68 | 0.846925 |
Target: 5'- cGUGCucgcgcAGCGCGuGGCaGGCCAGGa -3' miRNA: 3'- -UACGuuu---UCGCGUuCCGcCCGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 58491 | 0.68 | 0.850271 |
Target: 5'- aAUGCAAAauauacauuuauuguGGCGCGGGGCGc-CCGAGGu -3' miRNA: 3'- -UACGUUU---------------UCGCGUUCCGCccGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 133794 | 0.68 | 0.871145 |
Target: 5'- -cGCAAGGacauggccGCGCAGGGCGcGGCgCuGGGg -3' miRNA: 3'- uaCGUUUU--------CGCGUUCCGC-CCG-GuUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 99690 | 0.68 | 0.871145 |
Target: 5'- uUGCGGc-GCGCGGcGCGGGCCGc-- -3' miRNA: 3'- uACGUUuuCGCGUUcCGCCCGGUuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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