miRNA display CGI


Results 61 - 80 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 80020 0.72 0.659131
Target:  5'- -cGCGuuuGGCGCGGGGgGGGUCGGc- -3'
miRNA:   3'- uaCGUuu-UCGCGUUCCgCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 34602 0.72 0.669855
Target:  5'- -gGCGcuGGCGCGGcGGCGcGCCGAGGa -3'
miRNA:   3'- uaCGUuuUCGCGUU-CCGCcCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 120919 0.72 0.637622
Target:  5'- -gGCAuacGAGgGCGGGGCGGGCgCGcGGg -3'
miRNA:   3'- uaCGUu--UUCgCGUUCCGCCCG-GUuUC- -5'
6486 3' -53.4 NC_001847.1 + 95296 0.72 0.645156
Target:  5'- uUGCGGccgcuggcgccuccAGGCGCGGcgccGGCaGGGCCGAAGg -3'
miRNA:   3'- uACGUU--------------UUCGCGUU----CCG-CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 25402 0.72 0.648384
Target:  5'- -cGCGGAAGCaCu--GCGGGCCAGGGg -3'
miRNA:   3'- uaCGUUUUCGcGuucCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 59210 0.72 0.669855
Target:  5'- cGUGUGGcGGCGCAcGGCGGcGCCAc-- -3'
miRNA:   3'- -UACGUUuUCGCGUuCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 43560 0.72 0.669855
Target:  5'- -cGCGAgcGcCGCGAGGauGGCCGAGGc -3'
miRNA:   3'- uaCGUUuuC-GCGUUCCgcCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 53973 0.72 0.668784
Target:  5'- -cGCGAgcccuccGAGCgGCGcGGCGGGCCAGu- -3'
miRNA:   3'- uaCGUU-------UUCG-CGUuCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 19427 0.72 0.663424
Target:  5'- -aGCGGGAGCGCcaAAGGCcgcgcgcccgcugccGGGCCAGc- -3'
miRNA:   3'- uaCGUUUUCGCG--UUCCG---------------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 122816 0.72 0.659131
Target:  5'- -gGCAGGaccucgauGGCGCGcAGGUGGGCCGucAAGu -3'
miRNA:   3'- uaCGUUU--------UCGCGU-UCCGCCCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 132633 0.72 0.648384
Target:  5'- -gGCAgcAAAGCGCGAGGCGGcCCu--- -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCGCCcGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 98057 0.72 0.669855
Target:  5'- -cGCucuccGCGCucAGGCGGGCCAGu- -3'
miRNA:   3'- uaCGuuuu-CGCGu-UCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 48468 0.71 0.701782
Target:  5'- -cGUGAAAGCGCucaAAGcGCGGGUCGAGc -3'
miRNA:   3'- uaCGUUUUCGCG---UUC-CGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 22187 0.71 0.701782
Target:  5'- -cGCGAAuGCGCGGGcGCuGGGCCGu-- -3'
miRNA:   3'- uaCGUUUuCGCGUUC-CG-CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 121407 0.71 0.712308
Target:  5'- -gGCAGGAGCuGCGuggaGGGCGGaGCCGuuGa -3'
miRNA:   3'- uaCGUUUUCG-CGU----UCCGCC-CGGUuuC- -5'
6486 3' -53.4 NC_001847.1 + 35571 0.71 0.712308
Target:  5'- -cGCGAcgaGGGCGCcGGGCuGGCCAAc- -3'
miRNA:   3'- uaCGUU---UUCGCGuUCCGcCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 102698 0.71 0.722759
Target:  5'- -gGC-AGGGCGCcGGGCGGGCgGcgaAAGg -3'
miRNA:   3'- uaCGuUUUCGCGuUCCGCCCGgU---UUC- -5'
6486 3' -53.4 NC_001847.1 + 125274 0.71 0.722759
Target:  5'- -gGCAGAGGCgGCAggagccgucgcAGGUGGGgCAAGGc -3'
miRNA:   3'- uaCGUUUUCG-CGU-----------UCCGCCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 96924 0.71 0.722759
Target:  5'- -cGUAGAGGCGCGcGGCccGGGCCu--- -3'
miRNA:   3'- uaCGUUUUCGCGUuCCG--CCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 19266 0.71 0.680545
Target:  5'- -cGCGAGccggcGGCGCAGcgucugugcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUU-----UCGCGUU---------CCGCCCGGUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.