miRNA display CGI


Results 101 - 120 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 66245 0.71 0.680545
Target:  5'- -cGCGGcGGCGCucGGCaugcuGGGCCGGGGa -3'
miRNA:   3'- uaCGUUuUCGCGuuCCG-----CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 19266 0.71 0.680545
Target:  5'- -cGCGAGccggcGGCGCAGcgucugugcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUU-----UCGCGUU---------CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 72583 0.71 0.680545
Target:  5'- -cGCGAu-GCGC-GGGCuGGGCCAAAa -3'
miRNA:   3'- uaCGUUuuCGCGuUCCG-CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 22157 0.71 0.722759
Target:  5'- -cGCAAAagccGGCGCA--GCGGGCCGGc- -3'
miRNA:   3'- uaCGUUU----UCGCGUucCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 117392 0.71 0.701782
Target:  5'- gAUGCucugcGAGCGCGAGGCcGuGGCCGc-- -3'
miRNA:   3'- -UACGuu---UUCGCGUUCCG-C-CCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 52300 0.71 0.69119
Target:  5'- -cGCGAccgcGGGCGC-GGGCGGcGCCAAc- -3'
miRNA:   3'- uaCGUU----UUCGCGuUCCGCC-CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 133622 0.71 0.701782
Target:  5'- -gGCAcAAGCGCGcgcGGGgggaacacaaCGGGCCAAGGc -3'
miRNA:   3'- uaCGUuUUCGCGU---UCC----------GCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 35297 0.7 0.753551
Target:  5'- gGUGCGugGGCG-GGGGCGGGCaacgCAAAGc -3'
miRNA:   3'- -UACGUuuUCGCgUUCCGCCCG----GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 120388 0.7 0.747469
Target:  5'- uGUGCuugaacggcGAGCGCGAGGCccggcgcgcguauguGGGCgCAAAGa -3'
miRNA:   3'- -UACGuu-------UUCGCGUUCCG---------------CCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 132150 0.7 0.733123
Target:  5'- cUGCugccGCGCAGGGUGgGGCCGGc- -3'
miRNA:   3'- uACGuuuuCGCGUUCCGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 134662 0.7 0.753551
Target:  5'- -cGCGGAGGCGC-GGGCacccaugacGGcGCCGAAGc -3'
miRNA:   3'- uaCGUUUUCGCGuUCCG---------CC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 68451 0.7 0.753551
Target:  5'- -cGCGGGAGCGCccgcugugGAGGCgaGGGUUGAAGa -3'
miRNA:   3'- uaCGUUUUCGCG--------UUCCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 109215 0.7 0.763593
Target:  5'- -gGCAGAccaAGCGCcggcgggucGGCGGGCgAAAGa -3'
miRNA:   3'- uaCGUUU---UCGCGuu-------CCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 14096 0.7 0.773505
Target:  5'- -cGCGGAGGCGCu-GGCGGaCCAc-- -3'
miRNA:   3'- uaCGUUUUCGCGuuCCGCCcGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 120079 0.7 0.763593
Target:  5'- cUGCcGAGccGCGCGGGGCGGGagaUAAAGc -3'
miRNA:   3'- uACGuUUU--CGCGUUCCGCCCg--GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 61944 0.7 0.773505
Target:  5'- -aGCGGcGGCGCGGcccGcGCGGGCCGAc- -3'
miRNA:   3'- uaCGUUuUCGCGUU---C-CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 101136 0.7 0.733123
Target:  5'- uGUGgAGAugGGCGCGGGGgcugGGGCCGGGGc -3'
miRNA:   3'- -UACgUUU--UCGCGUUCCg---CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 6094 0.7 0.753551
Target:  5'- -cGCGGAGGCGCGagacgcccgcgAGGCGcGGCgCGAGc -3'
miRNA:   3'- uaCGUUUUCGCGU-----------UCCGC-CCG-GUUUc -5'
6486 3' -53.4 NC_001847.1 + 32824 0.7 0.753551
Target:  5'- -cGCGAgcGCGCGAGGCccgcguGGCCGccGAGa -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGc-----CCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 59311 0.7 0.753551
Target:  5'- gGUGCcAGGGCGCGGcgccGGCGGcGCCGu-- -3'
miRNA:   3'- -UACGuUUUCGCGUU----CCGCC-CGGUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.