miRNA display CGI


Results 121 - 140 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 68451 0.7 0.753551
Target:  5'- -cGCGGGAGCGCccgcugugGAGGCgaGGGUUGAAGa -3'
miRNA:   3'- uaCGUUUUCGCG--------UUCCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 70987 0.7 0.783278
Target:  5'- -cGCAAGcGGCcuGCAuGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUU-UCG--CGUuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 35297 0.7 0.753551
Target:  5'- gGUGCGugGGCG-GGGGCGGGCaacgCAAAGc -3'
miRNA:   3'- -UACGUuuUCGCgUUCCGCCCG----GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 32141 0.7 0.783278
Target:  5'- -gGCGGGGGCG-GGGGCGGGggccCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCgUUCCGCCC----GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 90809 0.7 0.763593
Target:  5'- -aGCGAGAGCGgAgcgagagcaaAGGCGGGgCGAGa -3'
miRNA:   3'- uaCGUUUUCGCgU----------UCCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 109215 0.7 0.763593
Target:  5'- -gGCAGAccaAGCGCcggcgggucGGCGGGCgAAAGa -3'
miRNA:   3'- uaCGUUU---UCGCGuu-------CCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 48473 0.7 0.773505
Target:  5'- -gGCAAAAGCGCGcGGCGaGCUccgaGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGUuCCGCcCGG----UUUC- -5'
6486 3' -53.4 NC_001847.1 + 132150 0.7 0.733123
Target:  5'- cUGCugccGCGCAGGGUGgGGCCGGc- -3'
miRNA:   3'- uACGuuuuCGCGUUCCGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 101082 0.7 0.732091
Target:  5'- -cGCGGGGGCcgggucgGCGGGGCGGGCgGGc- -3'
miRNA:   3'- uaCGUUUUCG-------CGUUCCGCCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 6094 0.7 0.753551
Target:  5'- -cGCGGAGGCGCGagacgcccgcgAGGCGcGGCgCGAGc -3'
miRNA:   3'- uaCGUUUUCGCGU-----------UCCGC-CCG-GUUUc -5'
6486 3' -53.4 NC_001847.1 + 134662 0.7 0.753551
Target:  5'- -cGCGGAGGCGC-GGGCacccaugacGGcGCCGAAGc -3'
miRNA:   3'- uaCGUUUUCGCGuUCCG---------CC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 56013 0.69 0.792901
Target:  5'- -cGCAGcGGGCGCAAGGUGGugGCCu--- -3'
miRNA:   3'- uaCGUU-UUCGCGUUCCGCC--CGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 33359 0.69 0.792901
Target:  5'- cUGCAcGAGGCGC-AGGCGGaaggcgcugccGCCAAGa -3'
miRNA:   3'- uACGU-UUUCGCGuUCCGCC-----------CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 28785 0.69 0.792901
Target:  5'- cUGCAGcGGCGCGugcaGGGCugccgGGGCCAcAGc -3'
miRNA:   3'- uACGUUuUCGCGU----UCCG-----CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 38875 0.69 0.792901
Target:  5'- -cGCAGuGGgGCAAGGCccacaaggGGGCCAu-- -3'
miRNA:   3'- uaCGUUuUCgCGUUCCG--------CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 105228 0.69 0.829687
Target:  5'- -cGCGGgcGCGCGggcacAGGCGGGCgCAc-- -3'
miRNA:   3'- uaCGUUuuCGCGU-----UCCGCCCG-GUuuc -5'
6486 3' -53.4 NC_001847.1 + 107813 0.69 0.820765
Target:  5'- -cGCGgcAAAGCGCGGcggcGGCGGcGCgGAGGg -3'
miRNA:   3'- uaCGU--UUUCGCGUU----CCGCC-CGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 29567 0.69 0.824357
Target:  5'- -gGCGGGGGCGCcGGcGCcggcgccgccgcgccGGGCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCGuUC-CG---------------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 5000 0.69 0.820765
Target:  5'- -cGCGgcAAAGCGCGGcggcGGCGGcGCgGAGGg -3'
miRNA:   3'- uaCGU--UUUCGCGUU----CCGCC-CGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 36180 0.69 0.829687
Target:  5'- uUGCGGcGGUGCGcGGCGaGGCCGcguacGAGg -3'
miRNA:   3'- uACGUUuUCGCGUuCCGC-CCGGU-----UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.