Results 141 - 160 of 371 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 38875 | 0.69 | 0.792901 |
Target: 5'- -cGCAGuGGgGCAAGGCccacaaggGGGCCAu-- -3' miRNA: 3'- uaCGUUuUCgCGUUCCG--------CCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 33359 | 0.69 | 0.792901 |
Target: 5'- cUGCAcGAGGCGC-AGGCGGaaggcgcugccGCCAAGa -3' miRNA: 3'- uACGU-UUUCGCGuUCCGCC-----------CGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 36180 | 0.69 | 0.829687 |
Target: 5'- uUGCGGcGGUGCGcGGCGaGGCCGcguacGAGg -3' miRNA: 3'- uACGUUuUCGCGUuCCGC-CCGGU-----UUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 135034 | 0.69 | 0.820765 |
Target: 5'- -gGCcGGGGCGCGGGGCGccGGacCCAGGGg -3' miRNA: 3'- uaCGuUUUCGCGUUCCGC--CC--GGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 5000 | 0.69 | 0.820765 |
Target: 5'- -cGCGgcAAAGCGCGGcggcGGCGGcGCgGAGGg -3' miRNA: 3'- uaCGU--UUUCGCGUU----CCGCC-CGgUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 90306 | 0.69 | 0.801424 |
Target: 5'- -gGCGAgcGCGCGuucggugGGGCcgccgGGGCCGGGGg -3' miRNA: 3'- uaCGUUuuCGCGU-------UCCG-----CCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 28785 | 0.69 | 0.792901 |
Target: 5'- cUGCAGcGGCGCGugcaGGGCugccgGGGCCAcAGc -3' miRNA: 3'- uACGUUuUCGCGU----UCCG-----CCCGGUuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 37022 | 0.69 | 0.799541 |
Target: 5'- cGUGCGGAgcggGGCGCcGGGCucgcacucuagccuGGGCUggGGg -3' miRNA: 3'- -UACGUUU----UCGCGuUCCG--------------CCCGGuuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 25740 | 0.69 | 0.792901 |
Target: 5'- -gGCAAAAGUaGgGAGGCaGGGCCGcGGc -3' miRNA: 3'- uaCGUUUUCG-CgUUCCG-CCCGGUuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 38749 | 0.69 | 0.792901 |
Target: 5'- cUGCGAccAGCGUGGcGGCGGGCCc--- -3' miRNA: 3'- uACGUUu-UCGCGUU-CCGCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 132380 | 0.69 | 0.824357 |
Target: 5'- -gGCGGGGGCGCcGGcGCcggcgccgccgcgccGGGCCGGGGg -3' miRNA: 3'- uaCGUUUUCGCGuUC-CG---------------CCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 3974 | 0.69 | 0.811654 |
Target: 5'- -gGCGAGGGCGCc-GG-GGGCCGGGc -3' miRNA: 3'- uaCGUUUUCGCGuuCCgCCCGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 56013 | 0.69 | 0.792901 |
Target: 5'- -cGCAGcGGGCGCAAGGUGGugGCCu--- -3' miRNA: 3'- uaCGUU-UUCGCGUUCCGCC--CGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 13117 | 0.69 | 0.802363 |
Target: 5'- -gGCcGGGGCGCGcGGGCGGcGCCGc-- -3' miRNA: 3'- uaCGuUUUCGCGU-UCCGCC-CGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 8284 | 0.69 | 0.811654 |
Target: 5'- -cGCAagacAAAGCgGCAGGGCuccccgggGGGCCAGGc -3' miRNA: 3'- uaCGU----UUUCG-CGUUCCG--------CCCGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 60866 | 0.69 | 0.811654 |
Target: 5'- -gGCGuccAGCGCGGGGCGGccgcGCCcGGGa -3' miRNA: 3'- uaCGUuu-UCGCGUUCCGCC----CGGuUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 125442 | 0.69 | 0.820765 |
Target: 5'- -cGCGcAGGGCGCGuccggggaGGGCGGGCUu--- -3' miRNA: 3'- uaCGU-UUUCGCGU--------UCCGCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 60497 | 0.69 | 0.820765 |
Target: 5'- uGUGCGc--GCGCGGgccGGCGGGCCu--- -3' miRNA: 3'- -UACGUuuuCGCGUU---CCGCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 97217 | 0.69 | 0.820765 |
Target: 5'- -cGCcGGGGCGCGAGuCGGGaCCAAGc -3' miRNA: 3'- uaCGuUUUCGCGUUCcGCCC-GGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 107813 | 0.69 | 0.820765 |
Target: 5'- -cGCGgcAAAGCGCGGcggcGGCGGcGCgGAGGg -3' miRNA: 3'- uaCGU--UUUCGCGUU----CCGCC-CGgUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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