miRNA display CGI


Results 181 - 200 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 58831 0.68 0.846925
Target:  5'- gGUGCGAGGGUcgGCAcuuGGGcCGGGCCc--- -3'
miRNA:   3'- -UACGUUUUCG--CGU---UCC-GCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 27894 0.68 0.846925
Target:  5'- -cGCGGAGuGCGcCGAGGCcgaggGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUU-CGC-GUUCCG-----CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 93216 0.68 0.846925
Target:  5'- cUGCGAcGGCG-AGGGCGaGGgCGAGGg -3'
miRNA:   3'- uACGUUuUCGCgUUCCGC-CCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 92732 0.68 0.846925
Target:  5'- cGUGCucgcgcAGCGCGuGGCaGGCCAGGa -3'
miRNA:   3'- -UACGuuu---UCGCGUuCCGcCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 32050 0.68 0.846925
Target:  5'- -cGCGAAagguccggGGCGCGGagacGGCggGGGCCGGGGa -3'
miRNA:   3'- uaCGUUU--------UCGCGUU----CCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 102872 0.68 0.846925
Target:  5'- -gGCGGAaauuucGGCGC--GGCGGGCCcGGGc -3'
miRNA:   3'- uaCGUUU------UCGCGuuCCGCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 82586 0.68 0.846925
Target:  5'- cGUGCGcGAAGCGCucgcGGCGGcGCCu--- -3'
miRNA:   3'- -UACGU-UUUCGCGuu--CCGCC-CGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 77253 0.68 0.846925
Target:  5'- -cGCGcgGGCGCu-GGCGGGCg---- -3'
miRNA:   3'- uaCGUuuUCGCGuuCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 134493 0.68 0.846925
Target:  5'- aGUGCAcgGGUGUAGuGUGGGCCGu-- -3'
miRNA:   3'- -UACGUuuUCGCGUUcCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 81510 0.68 0.846925
Target:  5'- -cGCAAAAucGUGCAgcucGGGCGGuGCCAc-- -3'
miRNA:   3'- uaCGUUUU--CGCGU----UCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 58491 0.68 0.850271
Target:  5'- aAUGCAAAauauacauuuauuguGGCGCGGGGCGc-CCGAGGu -3'
miRNA:   3'- -UACGUUU---------------UCGCGUUCCGCccGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 26340 0.68 0.852757
Target:  5'- -cGCGAAggcGGCGUAcaugcagcucucccGGGUGGGCCGc-- -3'
miRNA:   3'- uaCGUUU---UCGCGU--------------UCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 96191 0.68 0.855224
Target:  5'- -gGCAGcGGCaaugGCGGGGCcggagucgGGGCCGGAGu -3'
miRNA:   3'- uaCGUUuUCG----CGUUCCG--------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 3151 0.68 0.855224
Target:  5'- -gGCGccGGCgGCGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuuUCG-CGUuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 129198 0.68 0.855224
Target:  5'- -gGCuAGAAGCaGC-GGGCGGGCCc--- -3'
miRNA:   3'- uaCG-UUUUCG-CGuUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 105964 0.68 0.855224
Target:  5'- -gGCGccGGCgGCGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuuUCG-CGUuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 98695 0.68 0.855224
Target:  5'- -gGCcGAAGC-CGGGGCcgaagccgGGGCCGAAGc -3'
miRNA:   3'- uaCGuUUUCGcGUUCCG--------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 98659 0.68 0.855224
Target:  5'- -gGCcGAAGC-CGGGGCcgaagccgGGGCCGAAGc -3'
miRNA:   3'- uaCGuUUUCGcGUUCCG--------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 19884 0.68 0.855224
Target:  5'- -gGC---GGCGCu-GGCGGGCgCGAGGu -3'
miRNA:   3'- uaCGuuuUCGCGuuCCGCCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 26385 0.68 0.855224
Target:  5'- -gGCuAGAAGCaGC-GGGCGGGCCc--- -3'
miRNA:   3'- uaCG-UUUUCG-CGuUCCGCCCGGuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.