miRNA display CGI


Results 81 - 100 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 52300 0.71 0.69119
Target:  5'- -cGCGAccgcGGGCGC-GGGCGGcGCCAAc- -3'
miRNA:   3'- uaCGUU----UUCGCGuUCCGCC-CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 75031 0.71 0.69119
Target:  5'- -gGCAGAAgGCGCcgucGGUGGGCgGGAGg -3'
miRNA:   3'- uaCGUUUU-CGCGuu--CCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 81813 0.71 0.69119
Target:  5'- -cGCGGAGGCgGCGGGGCGcGCCGu-- -3'
miRNA:   3'- uaCGUUUUCG-CGUUCCGCcCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 134910 0.71 0.69119
Target:  5'- -gGCGucGGGGCGCGAGGCccGGGCUcgGGc -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCG--CCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 103114 0.71 0.69119
Target:  5'- -cGCGGGGgcuuccccGCGCGAGcGCGGGCCGccGg -3'
miRNA:   3'- uaCGUUUU--------CGCGUUC-CGCCCGGUuuC- -5'
6486 3' -53.4 NC_001847.1 + 32097 0.71 0.69119
Target:  5'- -gGCGucGGGGCGCGAGGCccGGGCUcgGGc -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCG--CCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 18987 0.71 0.701782
Target:  5'- aAUGCGAAaguuuAGCGCAcGGGCGGcGCCc--- -3'
miRNA:   3'- -UACGUUU-----UCGCGU-UCCGCC-CGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 117392 0.71 0.701782
Target:  5'- gAUGCucugcGAGCGCGAGGCcGuGGCCGc-- -3'
miRNA:   3'- -UACGuu---UUCGCGUUCCG-C-CCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 133622 0.71 0.701782
Target:  5'- -gGCAcAAGCGCGcgcGGGgggaacacaaCGGGCCAAGGc -3'
miRNA:   3'- uaCGUuUUCGCGU---UCC----------GCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 118931 0.71 0.701782
Target:  5'- -cGCGGAGGCuGCAacgccgcauGGcGCGGGCCAGu- -3'
miRNA:   3'- uaCGUUUUCG-CGU---------UC-CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 71073 0.71 0.701782
Target:  5'- --uCGAGGGCgGCGAGGCGgccGGCCAGGGc -3'
miRNA:   3'- uacGUUUUCG-CGUUCCGC---CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 57029 0.71 0.701782
Target:  5'- cUGCAGAacaaggAGCGCGcccuGUGGGCCGAGGc -3'
miRNA:   3'- uACGUUU------UCGCGUuc--CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 48468 0.71 0.701782
Target:  5'- -cGUGAAAGCGCucaAAGcGCGGGUCGAGc -3'
miRNA:   3'- uaCGUUUUCGCG---UUC-CGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 129342 0.71 0.701782
Target:  5'- -cGCGccAAGCGCAAGcGCGGuGCCGGGc -3'
miRNA:   3'- uaCGUu-UUCGCGUUC-CGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 125517 0.71 0.701782
Target:  5'- -gGCGGGccGGCGCGGcGGCGGGCgCAGc- -3'
miRNA:   3'- uaCGUUU--UCGCGUU-CCGCCCG-GUUuc -5'
6486 3' -53.4 NC_001847.1 + 22187 0.71 0.701782
Target:  5'- -cGCGAAuGCGCGGGcGCuGGGCCGu-- -3'
miRNA:   3'- uaCGUUUuCGCGUUC-CG-CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 134624 0.71 0.712308
Target:  5'- -aGUAGAacAGCGUgggcugGGGGCGGGCCGGc- -3'
miRNA:   3'- uaCGUUU--UCGCG------UUCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 35571 0.71 0.712308
Target:  5'- -cGCGAcgaGGGCGCcGGGCuGGCCAAc- -3'
miRNA:   3'- uaCGUU---UUCGCGuUCCGcCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 121407 0.71 0.712308
Target:  5'- -gGCAGGAGCuGCGuggaGGGCGGaGCCGuuGa -3'
miRNA:   3'- uaCGUUUUCG-CGU----UCCGCC-CGGUuuC- -5'
6486 3' -53.4 NC_001847.1 + 96924 0.71 0.722759
Target:  5'- -cGUAGAGGCGCGcGGCccGGGCCu--- -3'
miRNA:   3'- uaCGUUUUCGCGUuCCG--CCCGGuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.