miRNA display CGI


Results 101 - 120 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 22461 0.71 0.722759
Target:  5'- -gGCAGAGGCgGCAggagccgucgcAGGUGGGgCAAGGc -3'
miRNA:   3'- uaCGUUUUCG-CGU-----------UCCGCCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 124970 0.71 0.722759
Target:  5'- -cGCAAAagccGGCGCA--GCGGGCCGGc- -3'
miRNA:   3'- uaCGUUU----UCGCGUucCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 96924 0.71 0.722759
Target:  5'- -cGUAGAGGCGCGcGGCccGGGCCu--- -3'
miRNA:   3'- uaCGUUUUCGCGUuCCG--CCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 125274 0.71 0.722759
Target:  5'- -gGCAGAGGCgGCAggagccgucgcAGGUGGGgCAAGGc -3'
miRNA:   3'- uaCGUUUUCG-CGU-----------UCCGCCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 133587 0.71 0.722759
Target:  5'- -gGCGcgGGCGCGcuaucgggcGGGCGGGCUuGGGc -3'
miRNA:   3'- uaCGUuuUCGCGU---------UCCGCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 102698 0.71 0.722759
Target:  5'- -gGC-AGGGCGCcGGGCGGGCgGcgaAAGg -3'
miRNA:   3'- uaCGuUUUCGCGuUCCGCCCGgU---UUC- -5'
6486 3' -53.4 NC_001847.1 + 22157 0.71 0.722759
Target:  5'- -cGCAAAagccGGCGCA--GCGGGCCGGc- -3'
miRNA:   3'- uaCGUUU----UCGCGUucCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 101082 0.7 0.732091
Target:  5'- -cGCGGGGGCcgggucgGCGGGGCGGGCgGGc- -3'
miRNA:   3'- uaCGUUUUCG-------CGUUCCGCCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 101136 0.7 0.733123
Target:  5'- uGUGgAGAugGGCGCGGGGgcugGGGCCGGGGc -3'
miRNA:   3'- -UACgUUU--UCGCGUUCCg---CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 132150 0.7 0.733123
Target:  5'- cUGCugccGCGCAGGGUGgGGCCGGc- -3'
miRNA:   3'- uACGuuuuCGCGUUCCGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 30353 0.7 0.733123
Target:  5'- -aGCAcc-GCGCGuugcuGGCGGGCCAc-- -3'
miRNA:   3'- uaCGUuuuCGCGUu----CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 83080 0.7 0.747469
Target:  5'- -gGCGAAGGUGCccgcccacaccuccGGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUUUCGCGu-------------UCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 120388 0.7 0.747469
Target:  5'- uGUGCuugaacggcGAGCGCGAGGCccggcgcgcguauguGGGCgCAAAGa -3'
miRNA:   3'- -UACGuu-------UUCGCGUUCCG---------------CCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 35297 0.7 0.753551
Target:  5'- gGUGCGugGGCG-GGGGCGGGCaacgCAAAGc -3'
miRNA:   3'- -UACGUuuUCGCgUUCCGCCCG----GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 59311 0.7 0.753551
Target:  5'- gGUGCcAGGGCGCGGcgccGGCGGcGCCGu-- -3'
miRNA:   3'- -UACGuUUUCGCGUU----CCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 36528 0.7 0.753551
Target:  5'- uGUGCAcgcuGCGCGAGGCGGauUCGGAGa -3'
miRNA:   3'- -UACGUuuu-CGCGUUCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 134662 0.7 0.753551
Target:  5'- -cGCGGAGGCGC-GGGCacccaugacGGcGCCGAAGc -3'
miRNA:   3'- uaCGUUUUCGCGuUCCG---------CC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 6094 0.7 0.753551
Target:  5'- -cGCGGAGGCGCGagacgcccgcgAGGCGcGGCgCGAGc -3'
miRNA:   3'- uaCGUUUUCGCGU-----------UCCGC-CCG-GUUUc -5'
6486 3' -53.4 NC_001847.1 + 32824 0.7 0.753551
Target:  5'- -cGCGAgcGCGCGAGGCccgcguGGCCGccGAGa -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGc-----CCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 68451 0.7 0.753551
Target:  5'- -cGCGGGAGCGCccgcugugGAGGCgaGGGUUGAAGa -3'
miRNA:   3'- uaCGUUUUCGCG--------UUCCG--CCCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.