miRNA display CGI


Results 121 - 140 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 120079 0.7 0.763593
Target:  5'- cUGCcGAGccGCGCGGGGCGGGagaUAAAGc -3'
miRNA:   3'- uACGuUUU--CGCGUUCCGCCCg--GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 109215 0.7 0.763593
Target:  5'- -gGCAGAccaAGCGCcggcgggucGGCGGGCgAAAGa -3'
miRNA:   3'- uaCGUUU---UCGCGuu-------CCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 90809 0.7 0.763593
Target:  5'- -aGCGAGAGCGgAgcgagagcaaAGGCGGGgCGAGa -3'
miRNA:   3'- uaCGUUUUCGCgU----------UCCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 14096 0.7 0.773505
Target:  5'- -cGCGGAGGCGCu-GGCGGaCCAc-- -3'
miRNA:   3'- uaCGUUUUCGCGuuCCGCCcGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 48473 0.7 0.773505
Target:  5'- -gGCAAAAGCGCGcGGCGaGCUccgaGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGUuCCGCcCGG----UUUC- -5'
6486 3' -53.4 NC_001847.1 + 61944 0.7 0.773505
Target:  5'- -aGCGGcGGCGCGGcccGcGCGGGCCGAc- -3'
miRNA:   3'- uaCGUUuUCGCGUU---C-CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 70987 0.7 0.783278
Target:  5'- -cGCAAGcGGCcuGCAuGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUU-UCG--CGUuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 32141 0.7 0.783278
Target:  5'- -gGCGGGGGCG-GGGGCGGGggccCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCgUUCCGCCC----GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 27920 0.7 0.783278
Target:  5'- uUGCGGAGGC-CAGGGC-GGCCGu-- -3'
miRNA:   3'- uACGUUUUCGcGUUCCGcCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 46038 0.7 0.783278
Target:  5'- -gGCAAAGGUuuucucGCAcucgagcuugauGGGCGGGCgAAAGa -3'
miRNA:   3'- uaCGUUUUCG------CGU------------UCCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 134954 0.7 0.783278
Target:  5'- -gGCGGGGGCG-GGGGCGGGggccCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCgUUCCGCCC----GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 25740 0.69 0.792901
Target:  5'- -gGCAAAAGUaGgGAGGCaGGGCCGcGGc -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCG-CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 38749 0.69 0.792901
Target:  5'- cUGCGAccAGCGUGGcGGCGGGCCc--- -3'
miRNA:   3'- uACGUUu-UCGCGUU-CCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 98731 0.69 0.792901
Target:  5'- -gGCcGAAGC-CGGGGCcgGGGCCGGGGc -3'
miRNA:   3'- uaCGuUUUCGcGUUCCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 115153 0.69 0.792901
Target:  5'- -cGCAAAaauaGGCGCGuacaaaucGGCGGcGCCAAAa -3'
miRNA:   3'- uaCGUUU----UCGCGUu-------CCGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 28785 0.69 0.792901
Target:  5'- cUGCAGcGGCGCGugcaGGGCugccgGGGCCAcAGc -3'
miRNA:   3'- uACGUUuUCGCGU----UCCG-----CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 128553 0.69 0.792901
Target:  5'- -gGCAAAAGUaGgGAGGCaGGGCCGcGGc -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCG-CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 131598 0.69 0.792901
Target:  5'- cUGCAGcGGCGCGugcaGGGCugccgGGGCCAcAGc -3'
miRNA:   3'- uACGUUuUCGCGU----UCCG-----CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 56013 0.69 0.792901
Target:  5'- -cGCAGcGGGCGCAAGGUGGugGCCu--- -3'
miRNA:   3'- uaCGUU-UUCGCGUUCCGCC--CGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 33359 0.69 0.792901
Target:  5'- cUGCAcGAGGCGC-AGGCGGaaggcgcugccGCCAAGa -3'
miRNA:   3'- uACGU-UUUCGCGuUCCGCC-----------CGGUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.