miRNA display CGI


Results 141 - 160 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 25740 0.69 0.792901
Target:  5'- -gGCAAAAGUaGgGAGGCaGGGCCGcGGc -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCG-CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 38749 0.69 0.792901
Target:  5'- cUGCGAccAGCGUGGcGGCGGGCCc--- -3'
miRNA:   3'- uACGUUu-UCGCGUU-CCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 13374 0.69 0.796705
Target:  5'- -cGCGAAcggcgcgcacguccgGGCGCGccGCGGGCCcuGGg -3'
miRNA:   3'- uaCGUUU---------------UCGCGUucCGCCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 37022 0.69 0.799541
Target:  5'- cGUGCGGAgcggGGCGCcGGGCucgcacucuagccuGGGCUggGGg -3'
miRNA:   3'- -UACGUUU----UCGCGuUCCG--------------CCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 90306 0.69 0.801424
Target:  5'- -gGCGAgcGCGCGuucggugGGGCcgccgGGGCCGGGGg -3'
miRNA:   3'- uaCGUUuuCGCGU-------UCCG-----CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 88254 0.69 0.802363
Target:  5'- -gGCGcGGGGCGCcGGGCGGGgaCGGGGg -3'
miRNA:   3'- uaCGU-UUUCGCGuUCCGCCCg-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 124733 0.69 0.802363
Target:  5'- -cGCGAAccGCGCGGGGgaGGGCCGu-- -3'
miRNA:   3'- uaCGUUUu-CGCGUUCCg-CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 93101 0.69 0.802363
Target:  5'- -cGCAAa---GCGGGGCGGGCUAuaAAGg -3'
miRNA:   3'- uaCGUUuucgCGUUCCGCCCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 5150 0.69 0.802363
Target:  5'- -aGCAGGGGUGU---GCGGGCCAGGc -3'
miRNA:   3'- uaCGUUUUCGCGuucCGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 63744 0.69 0.802363
Target:  5'- -aGCAAcAGCGCcgccuggcGGcGCGGGCCAGGc -3'
miRNA:   3'- uaCGUUuUCGCGu-------UC-CGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 13117 0.69 0.802363
Target:  5'- -gGCcGGGGCGCGcGGGCGGcGCCGc-- -3'
miRNA:   3'- uaCGuUUUCGCGU-UCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 60866 0.69 0.811654
Target:  5'- -gGCGuccAGCGCGGGGCGGccgcGCCcGGGa -3'
miRNA:   3'- uaCGUuu-UCGCGUUCCGCC----CGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 103027 0.69 0.811654
Target:  5'- -aGCGccGGCGgcGGGCGGGCCGcAGc -3'
miRNA:   3'- uaCGUuuUCGCguUCCGCCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 3974 0.69 0.811654
Target:  5'- -gGCGAGGGCGCc-GG-GGGCCGGGc -3'
miRNA:   3'- uaCGUUUUCGCGuuCCgCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 8284 0.69 0.811654
Target:  5'- -cGCAagacAAAGCgGCAGGGCuccccgggGGGCCAGGc -3'
miRNA:   3'- uaCGU----UUUCG-CGUUCCG--------CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 111279 0.69 0.811654
Target:  5'- cUGCGAAAgcacuuuacGCGCGAGGCcagccggcucgGGGCCGu-- -3'
miRNA:   3'- uACGUUUU---------CGCGUUCCG-----------CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 135034 0.69 0.820765
Target:  5'- -gGCcGGGGCGCGGGGCGccGGacCCAGGGg -3'
miRNA:   3'- uaCGuUUUCGCGUUCCGC--CC--GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 97217 0.69 0.820765
Target:  5'- -cGCcGGGGCGCGAGuCGGGaCCAAGc -3'
miRNA:   3'- uaCGuUUUCGCGUUCcGCCC-GGUUUc -5'
6486 3' -53.4 NC_001847.1 + 60497 0.69 0.820765
Target:  5'- uGUGCGc--GCGCGGgccGGCGGGCCu--- -3'
miRNA:   3'- -UACGUuuuCGCGUU---CCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 125442 0.69 0.820765
Target:  5'- -cGCGcAGGGCGCGuccggggaGGGCGGGCUu--- -3'
miRNA:   3'- uaCGU-UUUCGCGU--------UCCGCCCGGuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.