miRNA display CGI


Results 161 - 180 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 60497 0.69 0.820765
Target:  5'- uGUGCGc--GCGCGGgccGGCGGGCCu--- -3'
miRNA:   3'- -UACGUuuuCGCGUU---CCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 135034 0.69 0.820765
Target:  5'- -gGCcGGGGCGCGGGGCGccGGacCCAGGGg -3'
miRNA:   3'- uaCGuUUUCGCGUUCCGC--CC--GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 125442 0.69 0.820765
Target:  5'- -cGCGcAGGGCGCGuccggggaGGGCGGGCUu--- -3'
miRNA:   3'- uaCGU-UUUCGCGU--------UCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 53764 0.69 0.820765
Target:  5'- cUGCGAGuGCGCAccgagcuaugcAGcGUGGGCCAGu- -3'
miRNA:   3'- uACGUUUuCGCGU-----------UC-CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 32221 0.69 0.820765
Target:  5'- -gGCcGGGGCGCGGGGCGccGGacCCAGGGg -3'
miRNA:   3'- uaCGuUUUCGCGUUCCGC--CC--GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 22629 0.69 0.820765
Target:  5'- -cGCGcAGGGCGCGuccggggaGGGCGGGCUu--- -3'
miRNA:   3'- uaCGU-UUUCGCGU--------UCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 29567 0.69 0.824357
Target:  5'- -gGCGGGGGCGCcGGcGCcggcgccgccgcgccGGGCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCGuUC-CG---------------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 132380 0.69 0.824357
Target:  5'- -gGCGGGGGCGCcGGcGCcggcgccgccgcgccGGGCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCGuUC-CG---------------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 105228 0.69 0.829687
Target:  5'- -cGCGGgcGCGCGggcacAGGCGGGCgCAc-- -3'
miRNA:   3'- uaCGUUuuCGCGU-----UCCGCCCG-GUuuc -5'
6486 3' -53.4 NC_001847.1 + 36180 0.69 0.829687
Target:  5'- uUGCGGcGGUGCGcGGCGaGGCCGcguacGAGg -3'
miRNA:   3'- uACGUUuUCGCGUuCCGC-CCGGU-----UUC- -5'
6486 3' -53.4 NC_001847.1 + 132499 0.69 0.829687
Target:  5'- -gGCGAAGGCGCcgcaagcggcGAcGGCGGucccGCCGAAGc -3'
miRNA:   3'- uaCGUUUUCGCG----------UU-CCGCC----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 88398 0.68 0.83841
Target:  5'- -gGCGGgcGGGCGCGccgucggguaccAGG-GGGCCAAGGu -3'
miRNA:   3'- uaCGUU--UUCGCGU------------UCCgCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 56189 0.68 0.83841
Target:  5'- cUGCGcGAGCGCcagccugcGGGGCacaGGGCCAGcAGg -3'
miRNA:   3'- uACGUuUUCGCG--------UUCCG---CCCGGUU-UC- -5'
6486 3' -53.4 NC_001847.1 + 23271 0.68 0.83841
Target:  5'- cUGCAAugGAGCGCugcacGGGgGGGCgGAGc -3'
miRNA:   3'- uACGUU--UUCGCGu----UCCgCCCGgUUUc -5'
6486 3' -53.4 NC_001847.1 + 83049 0.68 0.83841
Target:  5'- aGUGCGcuuGGGC-CGcGGCGcGGCCGAAGa -3'
miRNA:   3'- -UACGUu--UUCGcGUuCCGC-CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 126084 0.68 0.83841
Target:  5'- cUGCAAugGAGCGCugcacGGGgGGGCgGAGc -3'
miRNA:   3'- uACGUU--UUCGCGu----UCCgCCCGgUUUc -5'
6486 3' -53.4 NC_001847.1 + 116055 0.68 0.83841
Target:  5'- -aGCGAAAGCGgGAGcgaaaGCGgGGCCGAc- -3'
miRNA:   3'- uaCGUUUUCGCgUUC-----CGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 102872 0.68 0.846925
Target:  5'- -gGCGGAaauuucGGCGC--GGCGGGCCcGGGc -3'
miRNA:   3'- uaCGUUU------UCGCGuuCCGCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 32050 0.68 0.846925
Target:  5'- -cGCGAAagguccggGGCGCGGagacGGCggGGGCCGGGGa -3'
miRNA:   3'- uaCGUUU--------UCGCGUU----CCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 92732 0.68 0.846925
Target:  5'- cGUGCucgcgcAGCGCGuGGCaGGCCAGGa -3'
miRNA:   3'- -UACGuuu---UCGCGUuCCGcCCGGUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.