miRNA display CGI


Results 101 - 120 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 105324 0.67 0.90077
Target:  5'- uUGCGGAccugcgucgucgugGGCGcCGGGGCGcucgcguccacaaacGGCCAGAGc -3'
miRNA:   3'- uACGUUU--------------UCGC-GUUCCGC---------------CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 81569 0.67 0.900098
Target:  5'- -cGCAGcuGCGCGGGGCcggcGGCUAcGGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGc---CCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 64239 0.67 0.900098
Target:  5'- -gGCGgggGAGGC-CAcGGCGGGCCcuAGg -3'
miRNA:   3'- uaCGU---UUUCGcGUuCCGCCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 54392 0.67 0.900098
Target:  5'- -gGCGGccGCggGCGAGGCGGGCg---- -3'
miRNA:   3'- uaCGUUuuCG--CGUUCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 15386 0.67 0.900098
Target:  5'- -gGCGGucGGCGuCGGGGCugGGGCCGGGu -3'
miRNA:   3'- uaCGUUu-UCGC-GUUCCG--CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 26751 0.67 0.900098
Target:  5'- -gGCcguAGAGCGCGGGuGCGcGGCCu--- -3'
miRNA:   3'- uaCGu--UUUCGCGUUC-CGC-CCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 20899 0.67 0.900098
Target:  5'- -gGCAGcGAGCGCGucGCGGGCgAGc- -3'
miRNA:   3'- uaCGUU-UUCGCGUucCGCCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 116402 0.67 0.900098
Target:  5'- -gGCGGcGGCGCucuGGGCcccGGGCCGc-- -3'
miRNA:   3'- uaCGUUuUCGCGu--UCCG---CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 125465 0.67 0.900098
Target:  5'- -gGCGGGucGGCgGCAGcucgcGGCGGGCgCGAGGa -3'
miRNA:   3'- uaCGUUU--UCG-CGUU-----CCGCCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 14156 0.67 0.900098
Target:  5'- -cGCAGcGGCGgcCGGGGCGGccgcGCUAAAGg -3'
miRNA:   3'- uaCGUUuUCGC--GUUCCGCC----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 82382 0.67 0.900098
Target:  5'- cAUGuCAAuGGU-CAGGGCGGGCCGc-- -3'
miRNA:   3'- -UAC-GUUuUCGcGUUCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 118467 0.67 0.900098
Target:  5'- cGUGCcugcGGCGCAAGGCccGGGCg---- -3'
miRNA:   3'- -UACGuuu-UCGCGUUCCG--CCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 10859 0.67 0.900098
Target:  5'- -gGCcGAGGCGC--GGCGGGCgCGGGc -3'
miRNA:   3'- uaCGuUUUCGCGuuCCGCCCG-GUUUc -5'
6486 3' -53.4 NC_001847.1 + 95697 0.67 0.899423
Target:  5'- -cGCucuGGCGCGGGgggcggcGCGGGCCGc-- -3'
miRNA:   3'- uaCGuuuUCGCGUUC-------CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 95643 0.67 0.899423
Target:  5'- -cGCucuGGCGCGGGgggcggcGCGGGCCGc-- -3'
miRNA:   3'- uaCGuuuUCGCGUUC-------CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 95751 0.67 0.899423
Target:  5'- -cGCucuGGCGCGGGgggcggcGCGGGCCGc-- -3'
miRNA:   3'- uaCGuuuUCGCGUUC-------CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 119088 0.67 0.896011
Target:  5'- -aGCAGAGGCGCcgcggccgccgcGGGGCggcggggcaggcaugGGGCCGucGa -3'
miRNA:   3'- uaCGUUUUCGCG------------UUCCG---------------CCCGGUuuC- -5'
6486 3' -53.4 NC_001847.1 + 49723 0.67 0.893234
Target:  5'- cGUGCAAGugGGCGCcggcGAGGCGGuGCgCGu-- -3'
miRNA:   3'- -UACGUUU--UCGCG----UUCCGCC-CG-GUuuc -5'
6486 3' -53.4 NC_001847.1 + 18402 0.67 0.893234
Target:  5'- -cGCAGAAGCacagcgcggcguGCAGGGCcuuGGCCAc-- -3'
miRNA:   3'- uaCGUUUUCG------------CGUUCCGc--CCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 81047 0.67 0.893234
Target:  5'- cUGCGGGGGCGacguGGGCGuGGgCGGGGc -3'
miRNA:   3'- uACGUUUUCGCgu--UCCGC-CCgGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.