miRNA display CGI


Results 121 - 140 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 123605 0.67 0.893234
Target:  5'- uUGCAAGcccAGC-CAAGGCGgcaaacucGGCCGGGGc -3'
miRNA:   3'- uACGUUU---UCGcGUUCCGC--------CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 72740 0.67 0.893234
Target:  5'- -gGCAAcAGCGCc-GGCGGGUgcgcUAAAGa -3'
miRNA:   3'- uaCGUUuUCGCGuuCCGCCCG----GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 123489 0.67 0.893234
Target:  5'- -gGCugGGGCcgccgcaaGCGGGGCcgGGGCCAGGGc -3'
miRNA:   3'- uaCGuuUUCG--------CGUUCCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 73271 0.67 0.892534
Target:  5'- cGUGCAAcccccgcGGGCGCucggcAGGCGcGGCCu--- -3'
miRNA:   3'- -UACGUU-------UUCGCGu----UCCGC-CCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 130731 0.67 0.891126
Target:  5'- -gGCGGAGGCGCGgAGGacgcggacagcgccUGGGCCGcGGc -3'
miRNA:   3'- uaCGUUUUCGCGU-UCC--------------GCCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 128873 0.67 0.886118
Target:  5'- -gGCAAAAGCaaAAGGCGcGCuCGAAGg -3'
miRNA:   3'- uaCGUUUUCGcgUUCCGCcCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 107333 0.67 0.886118
Target:  5'- -cGCGu--GCGcCGGGGCGcgaauGGCCAGAGc -3'
miRNA:   3'- uaCGUuuuCGC-GUUCCGC-----CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 133173 0.67 0.886118
Target:  5'- -cGgGGAGGCGCu-GGCGGcGCCGc-- -3'
miRNA:   3'- uaCgUUUUCGCGuuCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 33969 0.67 0.886118
Target:  5'- -cGCGcuGGCGCcGGGCGcgcuGGCCGGGc -3'
miRNA:   3'- uaCGUuuUCGCGuUCCGC----CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 30360 0.67 0.886118
Target:  5'- -cGgGGAGGCGCu-GGCGGcGCCGc-- -3'
miRNA:   3'- uaCgUUUUCGCGuuCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 52868 0.67 0.886118
Target:  5'- -aGCAAggcguggccGAGCGCGuacAGGCGauGGCCAGu- -3'
miRNA:   3'- uaCGUU---------UUCGCGU---UCCGC--CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 38425 0.67 0.886118
Target:  5'- -cGCAGGGGCGgGagcccgagGGGCGGGCa---- -3'
miRNA:   3'- uaCGUUUUCGCgU--------UCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 27720 0.67 0.886118
Target:  5'- -gGCAAGGGCGuCAGcGGCGGaaGCCGcGGc -3'
miRNA:   3'- uaCGUUUUCGC-GUU-CCGCC--CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 34407 0.67 0.886118
Target:  5'- -gGCAGAcgcGGCGCuGGGgGcGGCgGAAGa -3'
miRNA:   3'- uaCGUUU---UCGCGuUCCgC-CCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 128023 0.67 0.886118
Target:  5'- -gGCAAGAcCgGCAAGGUGGGCUg--- -3'
miRNA:   3'- uaCGUUUUcG-CGUUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 134157 0.67 0.886118
Target:  5'- -gGCAGAAgGUGCGu-GCGGGCCGGc- -3'
miRNA:   3'- uaCGUUUU-CGCGUucCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 11192 0.67 0.886118
Target:  5'- -cGCugguccGCGCGGGGCuGGUCGAGGu -3'
miRNA:   3'- uaCGuuuu--CGCGUUCCGcCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 20259 0.67 0.886118
Target:  5'- -cGCGAGAGCgagacgGCGAGGuCGGcGCCGc-- -3'
miRNA:   3'- uaCGUUUUCG------CGUUCC-GCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 29715 0.67 0.886118
Target:  5'- -cGCGAGacugcGGCGCGGGaGCGGugGCCAAc- -3'
miRNA:   3'- uaCGUUU-----UCGCGUUC-CGCC--CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 130614 0.67 0.886118
Target:  5'- -cGCGGGGGC-CAccgaGGGCGccgaGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGcGU----UCCGC----CCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.