Results 141 - 160 of 371 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 20259 | 0.67 | 0.886118 |
Target: 5'- -cGCGAGAGCgagacgGCGAGGuCGGcGCCGc-- -3' miRNA: 3'- uaCGUUUUCG------CGUUCC-GCC-CGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 11192 | 0.67 | 0.886118 |
Target: 5'- -cGCugguccGCGCGGGGCuGGUCGAGGu -3' miRNA: 3'- uaCGuuuu--CGCGUUCCGcCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 128873 | 0.67 | 0.886118 |
Target: 5'- -gGCAAAAGCaaAAGGCGcGCuCGAAGg -3' miRNA: 3'- uaCGUUUUCGcgUUCCGCcCG-GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 130614 | 0.67 | 0.886118 |
Target: 5'- -cGCGGGGGC-CAccgaGGGCGccgaGGCCGAAGa -3' miRNA: 3'- uaCGUUUUCGcGU----UCCGC----CCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 60031 | 0.67 | 0.883934 |
Target: 5'- cGUGCcGucggccucuucgucGGGCGCGAGGCGGcGCgaAGAGa -3' miRNA: 3'- -UACGuU--------------UUCGCGUUCCGCC-CGg-UUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 47720 | 0.67 | 0.878753 |
Target: 5'- -aGCAGcucuucGAGCGCGgcGGGCGgGGCCc--- -3' miRNA: 3'- uaCGUU------UUCGCGU--UCCGC-CCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 106786 | 0.67 | 0.878753 |
Target: 5'- -cGCGAGGGCGCc-GG-GGGCCcGGGc -3' miRNA: 3'- uaCGUUUUCGCGuuCCgCCCGGuUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 87909 | 0.67 | 0.878753 |
Target: 5'- uUGCAcAGGgGCGGGGCgugGGGCUggGc -3' miRNA: 3'- uACGUuUUCgCGUUCCG---CCCGGuuUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 19904 | 0.67 | 0.878753 |
Target: 5'- -nGUAGAAGCGCAcgaGGGCGucgccGCCGAc- -3' miRNA: 3'- uaCGUUUUCGCGU---UCCGCc----CGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 9041 | 0.67 | 0.878753 |
Target: 5'- -cGCGAugcGGCGCGAGG-GGGCaauGGa -3' miRNA: 3'- uaCGUUu--UCGCGUUCCgCCCGguuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 133172 | 0.68 | 0.871145 |
Target: 5'- cUGCuaccuGCGCGGGcGCGGGCUg--- -3' miRNA: 3'- uACGuuuu-CGCGUUC-CGCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 104376 | 0.68 | 0.871145 |
Target: 5'- -cGCAGAcgcgcGGCGCugcaGCGGGCCGcGGu -3' miRNA: 3'- uaCGUUU-----UCGCGuuc-CGCCCGGUuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 99690 | 0.68 | 0.871145 |
Target: 5'- uUGCGGc-GCGCGGcGCGGGCCGc-- -3' miRNA: 3'- uACGUUuuCGCGUUcCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 131550 | 0.68 | 0.871145 |
Target: 5'- cUGCA-GAGCGCGAagcucGCGGGCCc--- -3' miRNA: 3'- uACGUuUUCGCGUUc----CGCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 58902 | 0.68 | 0.871145 |
Target: 5'- -gGCAAAuGCGCcgcGGGCGGGUguugcgcagcagCGAAGg -3' miRNA: 3'- uaCGUUUuCGCGu--UCCGCCCG------------GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 133794 | 0.68 | 0.871145 |
Target: 5'- -cGCAAGGacauggccGCGCAGGGCGcGGCgCuGGGg -3' miRNA: 3'- uaCGUUUU--------CGCGUUCCGC-CCG-GuUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 28737 | 0.68 | 0.871145 |
Target: 5'- cUGCA-GAGCGCGAagcucGCGGGCCc--- -3' miRNA: 3'- uACGUuUUCGCGUUc----CGCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 75407 | 0.68 | 0.871145 |
Target: 5'- -cGCGAGGcGgGCAucGCGGGCCAc-- -3' miRNA: 3'- uaCGUUUU-CgCGUucCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 97619 | 0.68 | 0.871145 |
Target: 5'- cGUGCAccgucgAGGGUGCGuccAGGCGGcgcGCCAAAa -3' miRNA: 3'- -UACGU------UUUCGCGU---UCCGCC---CGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 41637 | 0.68 | 0.871145 |
Target: 5'- -cGCGAGcGGCGCGccGGgGGGCCGcGAGa -3' miRNA: 3'- uaCGUUU-UCGCGUu-CCgCCCGGU-UUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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