miRNA display CGI


Results 161 - 180 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 58902 0.68 0.871145
Target:  5'- -gGCAAAuGCGCcgcGGGCGGGUguugcgcagcagCGAAGg -3'
miRNA:   3'- uaCGUUUuCGCGu--UCCGCCCG------------GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 41637 0.68 0.871145
Target:  5'- -cGCGAGcGGCGCGccGGgGGGCCGcGAGa -3'
miRNA:   3'- uaCGUUU-UCGCGUu-CCgCCCGGU-UUC- -5'
6486 3' -53.4 NC_001847.1 + 6761 0.68 0.870371
Target:  5'- gGUGCGGccGGUGCGAGGCGccagcugcuccguGGCCAc-- -3'
miRNA:   3'- -UACGUUu-UCGCGUUCCGC-------------CCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 67546 0.68 0.866466
Target:  5'- -cGCA--GGCGCGggcGGuucucccagaucggcGCGGGCCAAAGc -3'
miRNA:   3'- uaCGUuuUCGCGU---UC---------------CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 87946 0.68 0.8633
Target:  5'- cUGCGGGAGCGgAAGGUGGaCCu-GGa -3'
miRNA:   3'- uACGUUUUCGCgUUCCGCCcGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 130581 0.68 0.8633
Target:  5'- -cGCgGAGAGCaGCGAGGacgaCGGcGCCGGAGa -3'
miRNA:   3'- uaCG-UUUUCG-CGUUCC----GCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 42955 0.68 0.8633
Target:  5'- -cGCcgc-GCGCGggggGGGCGGGCCGccGg -3'
miRNA:   3'- uaCGuuuuCGCGU----UCCGCCCGGUuuC- -5'
6486 3' -53.4 NC_001847.1 + 84454 0.68 0.8633
Target:  5'- cGUGCGcgggggguggGGAGCGgGGGGgGGGgCGGGGg -3'
miRNA:   3'- -UACGU----------UUUCGCgUUCCgCCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 104294 0.68 0.8633
Target:  5'- -gGCAGAGcCGCAGcGGCGGcGCCucGGg -3'
miRNA:   3'- uaCGUUUUcGCGUU-CCGCC-CGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 1481 0.68 0.8633
Target:  5'- -gGCAGAGcCGCAGcGGCGGcGCCucGGg -3'
miRNA:   3'- uaCGUUUUcGCGUU-CCGCC-CGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 27768 0.68 0.8633
Target:  5'- -cGCgGAGAGCaGCGAGGacgaCGGcGCCGGAGa -3'
miRNA:   3'- uaCG-UUUUCG-CGUUCC----GCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 26385 0.68 0.855224
Target:  5'- -gGCuAGAAGCaGC-GGGCGGGCCc--- -3'
miRNA:   3'- uaCG-UUUUCG-CGuUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 96191 0.68 0.855224
Target:  5'- -gGCAGcGGCaaugGCGGGGCcggagucgGGGCCGGAGu -3'
miRNA:   3'- uaCGUUuUCG----CGUUCCG--------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 3151 0.68 0.855224
Target:  5'- -gGCGccGGCgGCGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuuUCG-CGUuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 105964 0.68 0.855224
Target:  5'- -gGCGccGGCgGCGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuuUCG-CGUuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 129198 0.68 0.855224
Target:  5'- -gGCuAGAAGCaGC-GGGCGGGCCc--- -3'
miRNA:   3'- uaCG-UUUUCG-CGuUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 98659 0.68 0.855224
Target:  5'- -gGCcGAAGC-CGGGGCcgaagccgGGGCCGAAGc -3'
miRNA:   3'- uaCGuUUUCGcGUUCCG--------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 19884 0.68 0.855224
Target:  5'- -gGC---GGCGCu-GGCGGGCgCGAGGu -3'
miRNA:   3'- uaCGuuuUCGCGuuCCGCCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 98695 0.68 0.855224
Target:  5'- -gGCcGAAGC-CGGGGCcgaagccgGGGCCGAAGc -3'
miRNA:   3'- uaCGuUUUCGcGUUCCG--------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 26340 0.68 0.852757
Target:  5'- -cGCGAAggcGGCGUAcaugcagcucucccGGGUGGGCCGc-- -3'
miRNA:   3'- uaCGUUU---UCGCGU--------------UCCGCCCGGUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.