miRNA display CGI


Results 61 - 80 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 25371 0.66 0.924955
Target:  5'- -gGCAGGGG-GCGGcGGCaGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUUCgCGUU-CCG-CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 25402 0.72 0.648384
Target:  5'- -cGCGGAAGCaCu--GCGGGCCAGGGg -3'
miRNA:   3'- uaCGUUUUCGcGuucCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 25459 1.06 0.005067
Target:  5'- aAUGCAAAAGCGCAAGGCGGGCCAAAGc -3'
miRNA:   3'- -UACGUUUUCGCGUUCCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 25740 0.69 0.792901
Target:  5'- -gGCAAAAGUaGgGAGGCaGGGCCGcGGc -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCG-CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 25996 0.66 0.919135
Target:  5'- -gGCGGgcGGGCGCGcAGGCgcgcacaaaaaGGGCCAAc- -3'
miRNA:   3'- uaCGUU--UUCGCGU-UCCG-----------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 26060 0.67 0.886118
Target:  5'- -gGCAAAAGCaaAAGGCGcGCuCGAAGg -3'
miRNA:   3'- uaCGUUUUCGcgUUCCGCcCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 26340 0.68 0.852757
Target:  5'- -cGCGAAggcGGCGUAcaugcagcucucccGGGUGGGCCGc-- -3'
miRNA:   3'- uaCGUUU---UCGCGU--------------UCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 26385 0.68 0.855224
Target:  5'- -gGCuAGAAGCaGC-GGGCGGGCCc--- -3'
miRNA:   3'- uaCG-UUUUCG-CGuUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 26490 0.79 0.298066
Target:  5'- -gGCGGGccuGGUGCAAGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUU---UCGCGUUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 26751 0.67 0.900098
Target:  5'- -gGCcguAGAGCGCGGGuGCGcGGCCu--- -3'
miRNA:   3'- uaCGu--UUUCGCGUUC-CGC-CCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 27267 0.66 0.935802
Target:  5'- -cGCGAGAGCcggauGUGAGGCugcccgccGGGCgAGAGg -3'
miRNA:   3'- uaCGUUUUCG-----CGUUCCG--------CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 27701 0.74 0.510532
Target:  5'- -cGCGcGAGCGCc-GGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuUUCGCGuuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 27720 0.67 0.886118
Target:  5'- -gGCAAGGGCGuCAGcGGCGGaaGCCGcGGc -3'
miRNA:   3'- uaCGUUUUCGC-GUU-CCGCC--CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 27768 0.68 0.8633
Target:  5'- -cGCgGAGAGCaGCGAGGacgaCGGcGCCGGAGa -3'
miRNA:   3'- uaCG-UUUUCG-CGUUCC----GCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 27801 0.67 0.886118
Target:  5'- -cGCGGGGGC-CAccgaGGGCGccgaGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGcGU----UCCGC----CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 27858 0.66 0.919135
Target:  5'- -cGCcAGGGaCGCGGGG-GGcGCCGAGGa -3'
miRNA:   3'- uaCGuUUUC-GCGUUCCgCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 27894 0.68 0.846925
Target:  5'- -cGCGGAGuGCGcCGAGGCcgaggGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUU-CGC-GUUCCG-----CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 27920 0.7 0.783278
Target:  5'- uUGCGGAGGC-CAGGGC-GGCCGu-- -3'
miRNA:   3'- uACGUUUUCGcGUUCCGcCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 27927 0.68 0.871145
Target:  5'- -cGCGGAGGaCGCGgacAGGCcuGGGCCGcGGc -3'
miRNA:   3'- uaCGUUUUC-GCGU---UCCG--CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 28737 0.68 0.871145
Target:  5'- cUGCA-GAGCGCGAagcucGCGGGCCc--- -3'
miRNA:   3'- uACGUuUUCGCGUUc----CGCCCGGuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.