miRNA display CGI


Results 81 - 100 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 28785 0.69 0.792901
Target:  5'- cUGCAGcGGCGCGugcaGGGCugccgGGGCCAcAGc -3'
miRNA:   3'- uACGUUuUCGCGU----UCCG-----CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 29201 0.67 0.913051
Target:  5'- uUGCuGGGGCuGCccgacGGCGGGCUGGAGc -3'
miRNA:   3'- uACGuUUUCG-CGuu---CCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 29325 0.66 0.919135
Target:  5'- -aGCGAgccgcGAGCGCGAGugcGCGGGCg---- -3'
miRNA:   3'- uaCGUU-----UUCGCGUUC---CGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 29435 0.66 0.935285
Target:  5'- -aGCG--AGCGCuGGGGCGuggcgccgcccgcGGCCGAAGc -3'
miRNA:   3'- uaCGUuuUCGCG-UUCCGC-------------CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 29567 0.69 0.824357
Target:  5'- -gGCGGGGGCGCcGGcGCcggcgccgccgcgccGGGCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCGuUC-CG---------------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 29638 0.66 0.930511
Target:  5'- -gGCcGGGGCGCcgcGGGCGGacCCGGAGg -3'
miRNA:   3'- uaCGuUUUCGCGu--UCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 29715 0.67 0.886118
Target:  5'- -cGCGAGacugcGGCGCGGGaGCGGugGCCAAc- -3'
miRNA:   3'- uaCGUUU-----UCGCGUUC-CGCC--CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 29800 0.74 0.524942
Target:  5'- -gGCGGGAGCGCcgccggguccgagggAAGGaagaaGGGCCGAGGa -3'
miRNA:   3'- uaCGUUUUCGCG---------------UUCCg----CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 30169 0.66 0.919135
Target:  5'- gGUGCGu-GGCGCucGGCGgaccuGGCCGAc- -3'
miRNA:   3'- -UACGUuuUCGCGuuCCGC-----CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 30353 0.7 0.733123
Target:  5'- -aGCAcc-GCGCGuugcuGGCGGGCCAc-- -3'
miRNA:   3'- uaCGUuuuCGCGUu----CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 30360 0.67 0.886118
Target:  5'- -cGgGGAGGCGCu-GGCGGcGCCGc-- -3'
miRNA:   3'- uaCgUUUUCGCGuuCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 30438 0.77 0.369079
Target:  5'- -cGCGGAGGCGCcggggcugcacGAGGUGGGCCGc-- -3'
miRNA:   3'- uaCGUUUUCGCG-----------UUCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 30981 0.68 0.871145
Target:  5'- -cGCAAGGacauggccGCGCAGGGCGcGGCgCuGGGg -3'
miRNA:   3'- uaCGUUUU--------CGCGUUCCGC-CCG-GuUUC- -5'
6486 3' -53.4 NC_001847.1 + 31632 0.66 0.924955
Target:  5'- -cGCGcuAGUGCAcuuuguuucGGCGGGcCCGGAGc -3'
miRNA:   3'- uaCGUuuUCGCGUu--------CCGCCC-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 31964 0.77 0.369079
Target:  5'- -cGCGGc-GCGCGGGGCGGGCCccGGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGCCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 32050 0.68 0.846925
Target:  5'- -cGCGAAagguccggGGCGCGGagacGGCggGGGCCGGGGa -3'
miRNA:   3'- uaCGUUU--------UCGCGUU----CCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 32097 0.71 0.69119
Target:  5'- -gGCGucGGGGCGCGAGGCccGGGCUcgGGc -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCG--CCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 32141 0.7 0.783278
Target:  5'- -gGCGGGGGCG-GGGGCGGGggccCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCgUUCCGCCC----GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 32221 0.69 0.820765
Target:  5'- -gGCcGGGGCGCGGGGCGccGGacCCAGGGg -3'
miRNA:   3'- uaCGuUUUCGCGUUCCGC--CC--GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 32322 0.66 0.930511
Target:  5'- -cGCAGGGGgccCGCGcGGCGcGGCgCGGAGg -3'
miRNA:   3'- uaCGUUUUC---GCGUuCCGC-CCG-GUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.