miRNA display CGI


Results 101 - 120 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 32824 0.7 0.753551
Target:  5'- -cGCGAgcGCGCGAGGCccgcguGGCCGccGAGa -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGc-----CCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 32941 0.66 0.935802
Target:  5'- -gGCGGcGGgGCcGGGgGGGCgGAGGa -3'
miRNA:   3'- uaCGUUuUCgCGuUCCgCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 32976 0.71 0.680545
Target:  5'- -gGcCAGAGGCGcCGGGGCGGGC-AGGGc -3'
miRNA:   3'- uaC-GUUUUCGC-GUUCCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 33133 0.67 0.886118
Target:  5'- cUGCGGcGGGUGguGGaGUGGGUCGAGGg -3'
miRNA:   3'- uACGUU-UUCGCguUC-CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 33359 0.69 0.792901
Target:  5'- cUGCAcGAGGCGC-AGGCGGaaggcgcugccGCCAAGa -3'
miRNA:   3'- uACGU-UUUCGCGuUCCGCC-----------CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 33499 0.66 0.94083
Target:  5'- -gGCGGcGGCGCGGgcggcGGCGGGCg---- -3'
miRNA:   3'- uaCGUUuUCGCGUU-----CCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 33529 0.77 0.386355
Target:  5'- -cGCGGAGGCGCcGGGCgcgGGcGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGuUCCG---CC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 33693 0.66 0.940339
Target:  5'- -cGCAGGcgcucgcGGCGCGGcGGCGcguGGCCGAGc -3'
miRNA:   3'- uaCGUUU-------UCGCGUU-CCGC---CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 33969 0.67 0.886118
Target:  5'- -cGCGcuGGCGCcGGGCGcgcuGGCCGGGc -3'
miRNA:   3'- uaCGUuuUCGCGuUCCGC----CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 34076 0.67 0.906704
Target:  5'- -gGCAcgcGGAGCGCGuGGCGGccGCCGu-- -3'
miRNA:   3'- uaCGU---UUUCGCGUuCCGCC--CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 34173 0.75 0.460534
Target:  5'- -gGCuGAGGCGCu--GCGGGCCGGGGg -3'
miRNA:   3'- uaCGuUUUCGCGuucCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 34407 0.67 0.886118
Target:  5'- -gGCAGAcgcGGCGCuGGGgGcGGCgGAAGa -3'
miRNA:   3'- uaCGUUU---UCGCGuUCCgC-CCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 34602 0.72 0.669855
Target:  5'- -gGCGcuGGCGCGGcGGCGcGCCGAGGa -3'
miRNA:   3'- uaCGUuuUCGCGUU-CCGCcCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 35297 0.7 0.753551
Target:  5'- gGUGCGugGGCG-GGGGCGGGCaacgCAAAGc -3'
miRNA:   3'- -UACGUuuUCGCgUUCCGCCCG----GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 35571 0.71 0.712308
Target:  5'- -cGCGAcgaGGGCGCcGGGCuGGCCAAc- -3'
miRNA:   3'- uaCGUU---UUCGCGuUCCGcCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 36180 0.69 0.829687
Target:  5'- uUGCGGcGGUGCGcGGCGaGGCCGcguacGAGg -3'
miRNA:   3'- uACGUUuUCGCGUuCCGC-CCGGU-----UUC- -5'
6486 3' -53.4 NC_001847.1 + 36528 0.7 0.753551
Target:  5'- uGUGCAcgcuGCGCGAGGCGGauUCGGAGa -3'
miRNA:   3'- -UACGUuuu-CGCGUUCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 36847 0.66 0.94083
Target:  5'- -gGCGGAcguGCGCucGGCGGcgGCCGAGc -3'
miRNA:   3'- uaCGUUUu--CGCGuuCCGCC--CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 37022 0.69 0.799541
Target:  5'- cGUGCGGAgcggGGCGCcGGGCucgcacucuagccuGGGCUggGGg -3'
miRNA:   3'- -UACGUUU----UCGCGuUCCG--------------CCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 37124 0.66 0.935802
Target:  5'- cAUGCucuGGGGCGCGcacgcccaGCGGGCCuuuGGGg -3'
miRNA:   3'- -UACGu--UUUCGCGUuc------CGCCCGGu--UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.