miRNA display CGI


Results 121 - 140 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 38425 0.67 0.886118
Target:  5'- -cGCAGGGGCGgGagcccgagGGGCGGGCa---- -3'
miRNA:   3'- uaCGUUUUCGCgU--------UCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 38749 0.69 0.792901
Target:  5'- cUGCGAccAGCGUGGcGGCGGGCCc--- -3'
miRNA:   3'- uACGUUu-UCGCGUU-CCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 38875 0.69 0.792901
Target:  5'- -cGCAGuGGgGCAAGGCccacaaggGGGCCAu-- -3'
miRNA:   3'- uaCGUUuUCgCGUUCCG--------CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 39419 0.66 0.930511
Target:  5'- --cCGAAAGCaGCGAGGgGGGCgCGuGGg -3'
miRNA:   3'- uacGUUUUCG-CGUUCCgCCCG-GUuUC- -5'
6486 3' -53.4 NC_001847.1 + 40377 0.74 0.531165
Target:  5'- -aGCGGAAGCGgGGGGCGacggccccGGCCAAGa -3'
miRNA:   3'- uaCGUUUUCGCgUUCCGC--------CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 41637 0.68 0.871145
Target:  5'- -cGCGAGcGGCGCGccGGgGGGCCGcGAGa -3'
miRNA:   3'- uaCGUUU-UCGCGUu-CCgCCCGGU-UUC- -5'
6486 3' -53.4 NC_001847.1 + 42492 0.66 0.935802
Target:  5'- -cGCcGAAGCGCu--GCGGGCgAAAc -3'
miRNA:   3'- uaCGuUUUCGCGuucCGCCCGgUUUc -5'
6486 3' -53.4 NC_001847.1 + 42733 0.67 0.906704
Target:  5'- -gGCGGccGCGCGGgcGGCGGGgCGGAc -3'
miRNA:   3'- uaCGUUuuCGCGUU--CCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 42955 0.68 0.8633
Target:  5'- -cGCcgc-GCGCGggggGGGCGGGCCGccGg -3'
miRNA:   3'- uaCGuuuuCGCGU----UCCGCCCGGUuuC- -5'
6486 3' -53.4 NC_001847.1 + 43128 0.67 0.913051
Target:  5'- -cGCAGAcGGCGCGGGcccGCGGGCg---- -3'
miRNA:   3'- uaCGUUU-UCGCGUUC---CGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 43560 0.72 0.669855
Target:  5'- -cGCGAgcGcCGCGAGGauGGCCGAGGc -3'
miRNA:   3'- uaCGUUuuC-GCGUUCCgcCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 44292 0.73 0.605344
Target:  5'- -gGCGGcgcGGCGCGGcgcGGCGGGCCAGc- -3'
miRNA:   3'- uaCGUUu--UCGCGUU---CCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 45497 0.67 0.906704
Target:  5'- -aGCAAAcGCcCGGGGCGGGCg---- -3'
miRNA:   3'- uaCGUUUuCGcGUUCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 45728 0.76 0.450845
Target:  5'- cGUGCA----CGCcgAAGGCGGGCCAGAGc -3'
miRNA:   3'- -UACGUuuucGCG--UUCCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 46038 0.7 0.783278
Target:  5'- -gGCAAAGGUuuucucGCAcucgagcuugauGGGCGGGCgAAAGa -3'
miRNA:   3'- uaCGUUUUCG------CGU------------UCCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 47720 0.67 0.878753
Target:  5'- -aGCAGcucuucGAGCGCGgcGGGCGgGGCCc--- -3'
miRNA:   3'- uaCGUU------UUCGCGU--UCCGC-CCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 48468 0.71 0.701782
Target:  5'- -cGUGAAAGCGCucaAAGcGCGGGUCGAGc -3'
miRNA:   3'- uaCGUUUUCGCG---UUC-CGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 48473 0.7 0.773505
Target:  5'- -gGCAAAAGCGCGcGGCGaGCUccgaGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGUuCCGCcCGG----UUUC- -5'
6486 3' -53.4 NC_001847.1 + 49397 0.66 0.94083
Target:  5'- -gGCcuggguGGCGCGGGGCugacGGCCAAGc -3'
miRNA:   3'- uaCGuuu---UCGCGUUCCGc---CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 49723 0.67 0.893234
Target:  5'- cGUGCAAGugGGCGCcggcGAGGCGGuGCgCGu-- -3'
miRNA:   3'- -UACGUUU--UCGCG----UUCCGCC-CG-GUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.