miRNA display CGI


Results 141 - 160 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 50070 0.72 0.637622
Target:  5'- -cGCGcgcGGCGCGgacccGGGCGcGGCCAAGGc -3'
miRNA:   3'- uaCGUuu-UCGCGU-----UCCGC-CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 51109 0.67 0.913051
Target:  5'- --uCAAGAuGCGCGAGGCGcuguacgaGGCCAAc- -3'
miRNA:   3'- uacGUUUU-CGCGUUCCGC--------CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 52102 0.66 0.935802
Target:  5'- -cGCGGcccAAGCGCAcuAGcggccGCGGGCCGGc- -3'
miRNA:   3'- uaCGUU---UUCGCGU--UC-----CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 52300 0.71 0.69119
Target:  5'- -cGCGAccgcGGGCGC-GGGCGGcGCCAAc- -3'
miRNA:   3'- uaCGUU----UUCGCGuUCCGCC-CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 52568 0.73 0.605344
Target:  5'- cUGCGAGAGCuggagcuCGAGGCGGcgGCCGAGGc -3'
miRNA:   3'- uACGUUUUCGc------GUUCCGCC--CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 52868 0.67 0.886118
Target:  5'- -aGCAAggcguggccGAGCGCGuacAGGCGauGGCCAGu- -3'
miRNA:   3'- uaCGUU---------UUCGCGU---UCCGC--CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 53590 0.66 0.919135
Target:  5'- -cGCAGcuGCGCGGGGCcGGCgAGc- -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGcCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 53764 0.69 0.820765
Target:  5'- cUGCGAGuGCGCAccgagcuaugcAGcGUGGGCCAGu- -3'
miRNA:   3'- uACGUUUuCGCGU-----------UC-CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 53833 0.67 0.913051
Target:  5'- -aGCGGGGGCGCugaagagccGGCgcggGGGUCAGGGg -3'
miRNA:   3'- uaCGUUUUCGCGuu-------CCG----CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 53943 0.66 0.94083
Target:  5'- -gGCucuguGCGCGAGGCGGccGCCu--- -3'
miRNA:   3'- uaCGuuuu-CGCGUUCCGCC--CGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 53973 0.72 0.668784
Target:  5'- -cGCGAgcccuccGAGCgGCGcGGCGGGCCAGu- -3'
miRNA:   3'- uaCGUU-------UUCG-CGUuCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 54354 0.66 0.935802
Target:  5'- -cGUAAAGGCGUguauaAAGGCcGGGUCGu-- -3'
miRNA:   3'- uaCGUUUUCGCG-----UUCCG-CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 54392 0.67 0.900098
Target:  5'- -gGCGGccGCggGCGAGGCGGGCg---- -3'
miRNA:   3'- uaCGUUuuCG--CGUUCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 54548 0.67 0.913051
Target:  5'- -cGCAGAcGGCG-GGGGCGGcGCgGAGGa -3'
miRNA:   3'- uaCGUUU-UCGCgUUCCGCC-CGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 55084 0.66 0.924955
Target:  5'- -gGCGGccGCGgGGGGCGGGUgGGc- -3'
miRNA:   3'- uaCGUUuuCGCgUUCCGCCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 55144 0.67 0.913051
Target:  5'- -cGCGcgGGCGCGGGGCGucaccGCCGc-- -3'
miRNA:   3'- uaCGUuuUCGCGUUCCGCc----CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 55703 0.75 0.460534
Target:  5'- cGUGCAAAcGGCGCGAGG-GGGCgaCAGAGc -3'
miRNA:   3'- -UACGUUU-UCGCGUUCCgCCCG--GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 56013 0.69 0.792901
Target:  5'- -cGCAGcGGGCGCAAGGUGGugGCCu--- -3'
miRNA:   3'- uaCGUU-UUCGCGUUCCGCC--CGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 56189 0.68 0.83841
Target:  5'- cUGCGcGAGCGCcagccugcGGGGCacaGGGCCAGcAGg -3'
miRNA:   3'- uACGUuUUCGCG--------UUCCG---CCCGGUU-UC- -5'
6486 3' -53.4 NC_001847.1 + 57029 0.71 0.701782
Target:  5'- cUGCAGAacaaggAGCGCGcccuGUGGGCCGAGGc -3'
miRNA:   3'- uACGUUU------UCGCGUuc--CGCCCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.