miRNA display CGI


Results 161 - 180 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 58491 0.68 0.850271
Target:  5'- aAUGCAAAauauacauuuauuguGGCGCGGGGCGc-CCGAGGu -3'
miRNA:   3'- -UACGUUU---------------UCGCGUUCCGCccGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 58831 0.68 0.846925
Target:  5'- gGUGCGAGGGUcgGCAcuuGGGcCGGGCCc--- -3'
miRNA:   3'- -UACGUUUUCG--CGU---UCC-GCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 58902 0.68 0.871145
Target:  5'- -gGCAAAuGCGCcgcGGGCGGGUguugcgcagcagCGAAGg -3'
miRNA:   3'- uaCGUUUuCGCGu--UCCGCCCG------------GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 59210 0.72 0.669855
Target:  5'- cGUGUGGcGGCGCAcGGCGGcGCCAc-- -3'
miRNA:   3'- -UACGUUuUCGCGUuCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 59246 0.66 0.94083
Target:  5'- -gGCGAuGGCGCc-GGCcaGGGCCAu-- -3'
miRNA:   3'- uaCGUUuUCGCGuuCCG--CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 59311 0.7 0.753551
Target:  5'- gGUGCcAGGGCGCGGcgccGGCGGcGCCGu-- -3'
miRNA:   3'- -UACGuUUUCGCGUU----CCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 59406 0.66 0.934242
Target:  5'- -gGCGGAGGCGCGGcGGUcaucgcugcgccccGGGCCu--- -3'
miRNA:   3'- uaCGUUUUCGCGUU-CCG--------------CCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 60031 0.67 0.883934
Target:  5'- cGUGCcGucggccucuucgucGGGCGCGAGGCGGcGCgaAGAGa -3'
miRNA:   3'- -UACGuU--------------UUCGCGUUCCGCC-CGg-UUUC- -5'
6486 3' -53.4 NC_001847.1 + 60497 0.69 0.820765
Target:  5'- uGUGCGc--GCGCGGgccGGCGGGCCu--- -3'
miRNA:   3'- -UACGUuuuCGCGUU---CCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 60866 0.69 0.811654
Target:  5'- -gGCGuccAGCGCGGGGCGGccgcGCCcGGGa -3'
miRNA:   3'- uaCGUuu-UCGCGUUCCGCC----CGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 61318 0.75 0.480236
Target:  5'- -cGCGGGuGCGCGGGGCGGGgCGGGc -3'
miRNA:   3'- uaCGUUUuCGCGUUCCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 61777 0.67 0.906704
Target:  5'- --aCGGuGGCGCGgugcGGGUGGGCCGGGu -3'
miRNA:   3'- uacGUUuUCGCGU----UCCGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 61944 0.7 0.773505
Target:  5'- -aGCGGcGGCGCGGcccGcGCGGGCCGAc- -3'
miRNA:   3'- uaCGUUuUCGCGUU---C-CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 62801 0.68 0.846925
Target:  5'- -gGCGAGAucGCGCAcaAGcCGGGCCGAGu -3'
miRNA:   3'- uaCGUUUU--CGCGU--UCcGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 63414 0.73 0.583921
Target:  5'- -cGCAcgGGAGCGCAcgcggcgccGGCGGGCCGGc- -3'
miRNA:   3'- uaCGU--UUUCGCGUu--------CCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 63454 0.66 0.919135
Target:  5'- -cGCAGAcGCGgAcgcGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUUuCGCgUu--CCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 63744 0.69 0.802363
Target:  5'- -aGCAAcAGCGCcgccuggcGGcGCGGGCCAGGc -3'
miRNA:   3'- uaCGUUuUCGCGu-------UC-CGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 64239 0.67 0.900098
Target:  5'- -gGCGgggGAGGC-CAcGGCGGGCCcuAGg -3'
miRNA:   3'- uaCGU---UUUCGcGUuCCGCCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 64466 0.72 0.626855
Target:  5'- -cGCGGcGGCGC--GGgGGGCCGAAGc -3'
miRNA:   3'- uaCGUUuUCGCGuuCCgCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 66245 0.71 0.680545
Target:  5'- -cGCGGcGGCGCucGGCaugcuGGGCCGGGGa -3'
miRNA:   3'- uaCGUUuUCGCGuuCCG-----CCCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.