miRNA display CGI


Results 61 - 80 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 123489 0.67 0.893234
Target:  5'- -gGCugGGGCcgccgcaaGCGGGGCcgGGGCCAGGGc -3'
miRNA:   3'- uaCGuuUUCG--------CGUUCCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 123292 0.74 0.510532
Target:  5'- -cGCGccgccCGCAGGGCGGcGCCAGAGg -3'
miRNA:   3'- uaCGUuuuc-GCGUUCCGCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 123099 0.66 0.939349
Target:  5'- -cGCAGc-GCGCAGGGCGuccagcgcuccgccGGgCAGAGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGC--------------CCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 122816 0.72 0.659131
Target:  5'- -gGCAGGaccucgauGGCGCGcAGGUGGGCCGucAAGu -3'
miRNA:   3'- uaCGUUU--------UCGCGU-UCCGCCCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 121407 0.71 0.712308
Target:  5'- -gGCAGGAGCuGCGuggaGGGCGGaGCCGuuGa -3'
miRNA:   3'- uaCGUUUUCG-CGU----UCCGCC-CGGUuuC- -5'
6486 3' -53.4 NC_001847.1 + 121187 0.66 0.918538
Target:  5'- cAUGCGGGAgcggcacuuGCGCGGGGCGGccccccuGCCGcGGc -3'
miRNA:   3'- -UACGUUUU---------CGCGUUCCGCC-------CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 120919 0.72 0.637622
Target:  5'- -gGCAuacGAGgGCGGGGCGGGCgCGcGGg -3'
miRNA:   3'- uaCGUu--UUCgCGUUCCGCCCG-GUuUC- -5'
6486 3' -53.4 NC_001847.1 + 120388 0.7 0.747469
Target:  5'- uGUGCuugaacggcGAGCGCGAGGCccggcgcgcguauguGGGCgCAAAGa -3'
miRNA:   3'- -UACGuu-------UUCGCGUUCCG---------------CCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 120079 0.7 0.763593
Target:  5'- cUGCcGAGccGCGCGGGGCGGGagaUAAAGc -3'
miRNA:   3'- uACGuUUU--CGCGUUCCGCCCg--GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 119729 0.67 0.913051
Target:  5'- --aCGGAGGCGCcgAGGGCGaGCCGAAa -3'
miRNA:   3'- uacGUUUUCGCG--UUCCGCcCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 119088 0.67 0.896011
Target:  5'- -aGCAGAGGCGCcgcggccgccgcGGGGCggcggggcaggcaugGGGCCGucGa -3'
miRNA:   3'- uaCGUUUUCGCG------------UUCCG---------------CCCGGUuuC- -5'
6486 3' -53.4 NC_001847.1 + 118931 0.71 0.701782
Target:  5'- -cGCGGAGGCuGCAacgccgcauGGcGCGGGCCAGu- -3'
miRNA:   3'- uaCGUUUUCG-CGU---------UC-CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 118890 0.71 0.69119
Target:  5'- gGUGCAcGGGGC-CGGGGCcgGGGCCGGGGc -3'
miRNA:   3'- -UACGU-UUUCGcGUUCCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 118467 0.67 0.900098
Target:  5'- cGUGCcugcGGCGCAAGGCccGGGCg---- -3'
miRNA:   3'- -UACGuuu-UCGCGUUCCG--CCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 117392 0.71 0.701782
Target:  5'- gAUGCucugcGAGCGCGAGGCcGuGGCCGc-- -3'
miRNA:   3'- -UACGuu---UUCGCGUUCCG-C-CCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 116402 0.67 0.900098
Target:  5'- -gGCGGcGGCGCucuGGGCcccGGGCCGc-- -3'
miRNA:   3'- uaCGUUuUCGCGu--UCCG---CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 116055 0.68 0.83841
Target:  5'- -aGCGAAAGCGgGAGcgaaaGCGgGGCCGAc- -3'
miRNA:   3'- uaCGUUUUCGCgUUC-----CGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 115281 0.72 0.636545
Target:  5'- -gGCGGGcuaagccGGCGCccccGGGcGCGGGCCAAGGg -3'
miRNA:   3'- uaCGUUU-------UCGCG----UUC-CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 115153 0.69 0.792901
Target:  5'- -cGCAAAaauaGGCGCGuacaaaucGGCGGcGCCAAAa -3'
miRNA:   3'- uaCGUUU----UCGCGUu-------CCGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 114295 0.72 0.626855
Target:  5'- -gGCAGGGGCGUucuuGcCGGGCCAGGGa -3'
miRNA:   3'- uaCGUUUUCGCGuu--CcGCCCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.