miRNA display CGI


Results 81 - 100 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 112045 0.66 0.924955
Target:  5'- -cGCGGuGGCGCGc-GCGGGCUAcguaGAGg -3'
miRNA:   3'- uaCGUUuUCGCGUucCGCCCGGU----UUC- -5'
6486 3' -53.4 NC_001847.1 + 111279 0.69 0.811654
Target:  5'- cUGCGAAAgcacuuuacGCGCGAGGCcagccggcucgGGGCCGu-- -3'
miRNA:   3'- uACGUUUU---------CGCGUUCCG-----------CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 110942 0.66 0.94083
Target:  5'- -cGC---GGgGC-GGGCGGGCCGAc- -3'
miRNA:   3'- uaCGuuuUCgCGuUCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 110129 0.67 0.906704
Target:  5'- uGUGUA--AGUGCAcagagAGGCGGGgCGAAa -3'
miRNA:   3'- -UACGUuuUCGCGU-----UCCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 109746 0.66 0.919135
Target:  5'- -aGCucGAGgGCGGGGCgaucgagucuauGGGCCAGu- -3'
miRNA:   3'- uaCGuuUUCgCGUUCCG------------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 109478 0.75 0.500341
Target:  5'- -cGCAugAGAGCGCAGucGCGGGCCGAc- -3'
miRNA:   3'- uaCGU--UUUCGCGUUc-CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 109268 0.66 0.935802
Target:  5'- -gGCAGGGGCgggcugcaaGCGAGGgGGGCgAgcAAGa -3'
miRNA:   3'- uaCGUUUUCG---------CGUUCCgCCCGgU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 109215 0.7 0.763593
Target:  5'- -gGCAGAccaAGCGCcggcgggucGGCGGGCgAAAGa -3'
miRNA:   3'- uaCGUUU---UCGCGuu-------CCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 108479 0.74 0.520808
Target:  5'- -cGCccAGGCGCgAAGGUGGGCCGGc- -3'
miRNA:   3'- uaCGuuUUCGCG-UUCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 107813 0.69 0.820765
Target:  5'- -cGCGgcAAAGCGCGGcggcGGCGGcGCgGAGGg -3'
miRNA:   3'- uaCGU--UUUCGCGUU----CCGCC-CGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 107700 0.66 0.919135
Target:  5'- cUGCGGuuggcGGCGCucgcGGGCGGGCa---- -3'
miRNA:   3'- uACGUUu----UCGCGu---UCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 107333 0.67 0.886118
Target:  5'- -cGCGu--GCGcCGGGGCGcgaauGGCCAGAGc -3'
miRNA:   3'- uaCGUuuuCGC-GUUCCGC-----CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 106786 0.67 0.878753
Target:  5'- -cGCGAGGGCGCc-GG-GGGCCcGGGc -3'
miRNA:   3'- uaCGUUUUCGCGuuCCgCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 106631 0.66 0.94083
Target:  5'- -gGCGGcGGCGCGcuGcCGGGCCAc-- -3'
miRNA:   3'- uaCGUUuUCGCGUucC-GCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 106073 0.66 0.935802
Target:  5'- -gGCAGGGGCGCcGGcgccGCGcGGCCGGc- -3'
miRNA:   3'- uaCGUUUUCGCGuUC----CGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 105964 0.68 0.855224
Target:  5'- -gGCGccGGCgGCGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuuUCG-CGUuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 105324 0.67 0.90077
Target:  5'- uUGCGGAccugcgucgucgugGGCGcCGGGGCGcucgcguccacaaacGGCCAGAGc -3'
miRNA:   3'- uACGUUU--------------UCGC-GUUCCGC---------------CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 105228 0.69 0.829687
Target:  5'- -cGCGGgcGCGCGggcacAGGCGGGCgCAc-- -3'
miRNA:   3'- uaCGUUuuCGCGU-----UCCGCCCG-GUuuc -5'
6486 3' -53.4 NC_001847.1 + 104906 0.73 0.616092
Target:  5'- -cGCGGGGcccGCGCGGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUUU---CGCGUU-CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 104376 0.68 0.871145
Target:  5'- -cGCAGAcgcgcGGCGCugcaGCGGGCCGcGGu -3'
miRNA:   3'- uaCGUUU-----UCGCGuuc-CGCCCGGUuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.