miRNA display CGI


Results 101 - 120 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 104352 0.76 0.441268
Target:  5'- -cGCGAAGGCGCc---CGGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGuuccGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 104294 0.68 0.8633
Target:  5'- -gGCAGAGcCGCAGcGGCGGcGCCucGGg -3'
miRNA:   3'- uaCGUUUUcGCGUU-CCGCC-CGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 103299 0.66 0.935802
Target:  5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3'
miRNA:   3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 103114 0.71 0.69119
Target:  5'- -cGCGGGGgcuuccccGCGCGAGcGCGGGCCGccGg -3'
miRNA:   3'- uaCGUUUU--------CGCGUUC-CGCCCGGUuuC- -5'
6486 3' -53.4 NC_001847.1 + 103027 0.69 0.811654
Target:  5'- -aGCGccGGCGgcGGGCGGGCCGcAGc -3'
miRNA:   3'- uaCGUuuUCGCguUCCGCCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 103004 0.66 0.930511
Target:  5'- cGUGCGcgGGCGC--GGCGGcGCCc--- -3'
miRNA:   3'- -UACGUuuUCGCGuuCCGCC-CGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 102872 0.68 0.846925
Target:  5'- -gGCGGAaauuucGGCGC--GGCGGGCCcGGGc -3'
miRNA:   3'- uaCGUUU------UCGCGuuCCGCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 102698 0.71 0.722759
Target:  5'- -gGC-AGGGCGCcGGGCGGGCgGcgaAAGg -3'
miRNA:   3'- uaCGuUUUCGCGuUCCGCCCGgU---UUC- -5'
6486 3' -53.4 NC_001847.1 + 102673 0.75 0.500341
Target:  5'- -cGCGAGGGCgGgGGGGCGGGgCGGGGg -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCGCCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 102069 0.73 0.583921
Target:  5'- -gGCAGcAAGgGCAGGcGCGGGCCGc-- -3'
miRNA:   3'- uaCGUU-UUCgCGUUC-CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 101906 0.66 0.930511
Target:  5'- -aGCGGAGGCGCcgcggcgcccGGcGCGGcGCCAAGc -3'
miRNA:   3'- uaCGUUUUCGCGu---------UC-CGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 101136 0.7 0.733123
Target:  5'- uGUGgAGAugGGCGCGGGGgcugGGGCCGGGGc -3'
miRNA:   3'- -UACgUUU--UCGCGUUCCg---CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 101082 0.7 0.732091
Target:  5'- -cGCGGGGGCcgggucgGCGGGGCGGGCgGGc- -3'
miRNA:   3'- uaCGUUUUCG-------CGUUCCGCCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 100884 0.74 0.520808
Target:  5'- -gGCAGGGGCGCGGccGGCGGGagaCGGGGu -3'
miRNA:   3'- uaCGUUUUCGCGUU--CCGCCCg--GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 99690 0.68 0.871145
Target:  5'- uUGCGGc-GCGCGGcGCGGGCCGc-- -3'
miRNA:   3'- uACGUUuuCGCGUUcCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 98731 0.69 0.792901
Target:  5'- -gGCcGAAGC-CGGGGCcgGGGCCGGGGc -3'
miRNA:   3'- uaCGuUUUCGcGUUCCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 98695 0.68 0.855224
Target:  5'- -gGCcGAAGC-CGGGGCcgaagccgGGGCCGAAGc -3'
miRNA:   3'- uaCGuUUUCGcGUUCCG--------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 98659 0.68 0.855224
Target:  5'- -gGCcGAAGC-CGGGGCcgaagccgGGGCCGAAGc -3'
miRNA:   3'- uaCGuUUUCGcGUUCCG--------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 98057 0.72 0.669855
Target:  5'- -cGCucuccGCGCucAGGCGGGCCAGu- -3'
miRNA:   3'- uaCGuuuu-CGCGu-UCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 97619 0.68 0.871145
Target:  5'- cGUGCAccgucgAGGGUGCGuccAGGCGGcgcGCCAAAa -3'
miRNA:   3'- -UACGU------UUUCGCGU---UCCGCC---CGGUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.